Debian 13 (Trixie) native package

abyss

de novo, parallel, sequence assembler for short reads

Packages / Debian 13 (Trixie) / science / abyss

[Source: abyss]

Package: abyss

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

de novo, parallel, sequence assembler for short reads

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Paketdateipfade (79)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/abyss-fixmate
/usr/bin/abyss-pe
/usr/bin/DistanceEst
/usr/lib/abyss/ABYSS
/usr/lib/abyss/abyss-align
/usr/lib/abyss/abyss-bloom
/usr/lib/abyss/abyss-bloom-dbg
/usr/lib/abyss/abyss-bloom-dist.mk
/usr/lib/abyss/abyss-bowtie
/usr/lib/abyss/abyss-bowtie2
/usr/lib/abyss/abyss-bwa
/usr/lib/abyss/abyss-bwamem
/usr/lib/abyss/abyss-bwasw
/usr/lib/abyss/abyss-db-csv
/usr/lib/abyss/abyss-db-txt
/usr/lib/abyss/abyss-dida
/usr/lib/abyss/abyss-fac
/usr/lib/abyss/abyss-fatoagp
/usr/lib/abyss/abyss-filtergraph
/usr/lib/abyss/abyss-fixmate
/usr/lib/abyss/abyss-fixmate-ssq
/usr/lib/abyss/abyss-gapfill
/usr/lib/abyss/abyss-gc
/usr/lib/abyss/abyss-index
/usr/lib/abyss/abyss-junction
/usr/lib/abyss/abyss-kaligner
/usr/lib/abyss/abyss-layout
/usr/lib/abyss/abyss-longseqdist
/usr/lib/abyss/abyss-map
/usr/lib/abyss/abyss-map-ssq
/usr/lib/abyss/abyss-mergepairs
/usr/lib/abyss/abyss-overlap
/usr/lib/abyss/ABYSS-P
/usr/lib/abyss/abyss-paired-dbg
/usr/lib/abyss/abyss-paired-dbg-mpi
/usr/lib/abyss/abyss-pe
/usr/lib/abyss/abyss-rresolver-short
/usr/lib/abyss/abyss-samtoafg
/usr/lib/abyss/abyss-scaffold
/usr/lib/abyss/abyss-sealer
/usr/lib/abyss/abyss-stack-size
/usr/lib/abyss/abyss-tabtomd
/usr/lib/abyss/abyss-todot
/usr/lib/abyss/abyss-tofastq
/usr/lib/abyss/AdjList
/usr/lib/abyss/Consensus
/usr/lib/abyss/DAssembler
/usr/lib/abyss/DistanceEst
/usr/lib/abyss/DistanceEst-ssq
/usr/lib/abyss/KAligner
/usr/lib/abyss/konnector
/usr/lib/abyss/logcounter
/usr/lib/abyss/MergeContigs
/usr/lib/abyss/MergePaths
/usr/lib/abyss/Overlap
/usr/lib/abyss/ParseAligns
/usr/lib/abyss/PathConsensus
/usr/lib/abyss/PathOverlap
/usr/lib/abyss/PopBubbles
/usr/lib/abyss/SimpleGraph
/usr/share/doc/abyss/changelog.Debian.amd64.gz
/usr/share/doc/abyss/changelog.Debian.arm64.gz
/usr/share/doc/abyss/changelog.Debian.gz
/usr/share/doc/abyss/changelog.gz
/usr/share/doc/abyss/CITATION.bib
/usr/share/doc/abyss/CITATION.md
/usr/share/doc/abyss/copyright
/usr/share/doc/abyss/flowchart.pdf.gz
/usr/share/doc/abyss/flowchart_simplified.pdf.gz
/usr/share/doc/abyss/README.html
/usr/share/doc/abyss/README.md.gz
/usr/share/doc/abyss/README.test
/usr/share/doc/abyss/run-unit-test
/usr/share/doc/abyss/test-data/reads1.fastq.gz
/usr/share/doc/abyss/test-data/reads2.fastq.gz
/usr/share/doc-base/abyss.abyss-flowcharts
/usr/share/man/man1/abyss-fixmate.1.gz
/usr/share/man/man1/abyss-pe.1.gz
/usr/share/man/man1/DistanceEst.1.gz

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testen Image mit abyss bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified