Debian 13 (Trixie) native package

fasta3

tools for searching collections of biological sequences

Packages / Debian 13 (Trixie) / science / fasta3

Package: fasta3 (36.3.8i.14-Nov-2020-3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [fasta.bioch.virginia.edu]

tools for searching collections of biological sequences

Other Packages Related to fasta3:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [python3]
interactive high-level object-oriented language (default python3 version)

rec: [r-base-core]
GNU R core of statistical computation and graphics system

sug: [perl] [any]
Larry Wall's Practical Extraction and Report Language
sug: [libdbi-perl]
Perl Database Interface (DBI)
sug: [libwww-perl]
simple and consistent interface to the world-wide web
sug: [libjson-perl]
module for manipulating JSON-formatted data
sug: [libhtml-tableextract-perl]
module for extracting the content contained in HTML tables
sug: [libxml-twig-perl]
Perl module for processing huge XML documents in tree mode
sug: [liburi-encode-perl]
Perl module to encode and decode strings to URIs
sug: [libdbd-mysql-perl]
Perl5 database interface to the MariaDB/MySQL database
sug: [python3-mysqldb]
Python interface to MySQL
sug: python3-mysql.connector
Package not available
sug: [python3-requests]
elegant and simple HTTP library for Python3, built for human beings
sug: [ncbi-blast+]
next generation suite of BLAST sequence search tools
sug: [bedtools]
suite of utilities for comparing genomic features

Download fasta3

Architecture	Package Size	Installed Size	Files
amd64	955 KiB	7.0 MiB	[list of files]
arm64	865 KiB	7.0 MiB	[list of files]

Paketdateipfade (188)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/fasta36
/usr/bin/fastf36
/usr/bin/fastm36
/usr/bin/fasts36
/usr/bin/fastx36
/usr/bin/fasty36
/usr/bin/ggsearch36
/usr/bin/glsearch36
/usr/bin/lalign36
/usr/bin/map_db
/usr/bin/ssearch36
/usr/bin/tfastf36
/usr/bin/tfastm36
/usr/bin/tfasts36
/usr/bin/tfastx36
/usr/bin/tfasty36
/usr/share/doc/fasta3/changelog.Debian.gz
/usr/share/doc/fasta3/copyright
/usr/share/doc/fasta3/examples/seq/bovgh.seq
/usr/share/doc/fasta3/examples/seq/bovprl.seq
/usr/share/doc/fasta3/examples/seq/dna_test_s.nlib
/usr/share/doc/fasta3/examples/seq/dyr_human.aa
/usr/share/doc/fasta3/examples/seq/egmsmg.aa
/usr/share/doc/fasta3/examples/seq/grou_drome.pseg
/usr/share/doc/fasta3/examples/seq/gstm1b_human_fs.nt
/usr/share/doc/fasta3/examples/seq/gstm1b_human.nt
/usr/share/doc/fasta3/examples/seq/gstm1_human.vaa
/usr/share/doc/fasta3/examples/seq/gst.nlib
/usr/share/doc/fasta3/examples/seq/gst.seq
/usr/share/doc/fasta3/examples/seq/gstt1_drome.aa
/usr/share/doc/fasta3/examples/seq/gtm1_human.aa
/usr/share/doc/fasta3/examples/seq/gtt1_drome.aa
/usr/share/doc/fasta3/examples/seq/h10_human.aa
/usr/share/doc/fasta3/examples/seq/hahu.aa
/usr/share/doc/fasta3/examples/seq/hsgstm1b.gcg
/usr/share/doc/fasta3/examples/seq/hsgstm1b.seq
/usr/share/doc/fasta3/examples/seq/humgstd.seq
/usr/share/doc/fasta3/examples/seq/lcbo.aa
/usr/share/doc/fasta3/examples/seq/m1r.aa
/usr/share/doc/fasta3/examples/seq/m2.aa
/usr/share/doc/fasta3/examples/seq/mchu.aa
/usr/share/doc/fasta3/examples/seq/mgstm1.3nt
/usr/share/doc/fasta3/examples/seq/mgstm1.aa
/usr/share/doc/fasta3/examples/seq/mgstm1.aaa
/usr/share/doc/fasta3/examples/seq/mgstm1.e05
/usr/share/doc/fasta3/examples/seq/mgstm1.eeq
/usr/share/doc/fasta3/examples/seq/mgstm1.esq
/usr/share/doc/fasta3/examples/seq/mgstm1.gcg
/usr/share/doc/fasta3/examples/seq/mgstm1_genclone.seq
/usr/share/doc/fasta3/examples/seq/mgstm1.lc
/usr/share/doc/fasta3/examples/seq/mgstm1.nt
/usr/share/doc/fasta3/examples/seq/mgstm1.nt1
/usr/share/doc/fasta3/examples/seq/mgstm1.nt12r
/usr/share/doc/fasta3/examples/seq/mgstm1.nt13
/usr/share/doc/fasta3/examples/seq/mgstm1.nt13r
/usr/share/doc/fasta3/examples/seq/mgstm1.nt1r
/usr/share/doc/fasta3/examples/seq/mgstm1.nts
/usr/share/doc/fasta3/examples/seq/mgstm1.raa
/usr/share/doc/fasta3/examples/seq/mgstm1.rev
/usr/share/doc/fasta3/examples/seq/mgstm1.seq
/usr/share/doc/fasta3/examples/seq/mgtt2_x.seq
/usr/share/doc/fasta3/examples/seq/ms1.aa
/usr/share/doc/fasta3/examples/seq/mu.lib
/usr/share/doc/fasta3/examples/seq/musplfm.aa
/usr/share/doc/fasta3/examples/seq/mwkw.aa
/usr/share/doc/fasta3/examples/seq/mwrtc1.aa
/usr/share/doc/fasta3/examples/seq/myosin_bp.aa
/usr/share/doc/fasta3/examples/seq/n0.aa
/usr/share/doc/fasta3/examples/seq/n1.aa
/usr/share/doc/fasta3/examples/seq/n2.aa
/usr/share/doc/fasta3/examples/seq/n2_fs.lib
/usr/share/doc/fasta3/examples/seq/n2s.aa
/usr/share/doc/fasta3/examples/seq/n2t.aa
/usr/share/doc/fasta3/examples/seq/n_fs.lib
/usr/share/doc/fasta3/examples/seq/ngt.aa
/usr/share/doc/fasta3/examples/seq/ngts.aa
/usr/share/doc/fasta3/examples/seq/oohu.aa
/usr/share/doc/fasta3/examples/seq/oohu.raa
/usr/share/doc/fasta3/examples/seq/prio_atepa.aa
/usr/share/doc/fasta3/examples/seq/prot_test.lib
/usr/share/doc/fasta3/examples/seq/prot_test.lseg
/usr/share/doc/fasta3/examples/seq/prot_test_s.lseg
/usr/share/doc/fasta3/examples/seq/qrhuld.aa
/usr/share/doc/fasta3/examples/seq/titin_hum.aa
/usr/share/doc/fasta3/examples/seq/titin_hum.seq
/usr/share/doc/fasta3/examples/seq/vav_human.aa
/usr/share/doc/fasta3/examples/seq/xurt8c.aa
/usr/share/doc/fasta3/examples/seq/xurt8c.lc
/usr/share/doc/fasta3/examples/seq/xurtg.aa
/usr/share/doc/fasta3/examples/sql/create_seq_demo.sql
/usr/share/doc/fasta3/examples/sql/join_up50.pl
/usr/share/doc/fasta3/examples/sql/mysql_demo1.sql
/usr/share/doc/fasta3/examples/sql/mysql_demo_pv.sql
/usr/share/doc/fasta3/examples/sql/nr_to_sql.pl
/usr/share/doc/fasta3/examples/sql/pirpsd.sql
/usr/share/doc/fasta3/examples/sql/psql_demo1.sql
/usr/share/doc/fasta3/examples/sql/psql_demo_pv.sql
/usr/share/doc/fasta3/examples/sql/psql_demo.sql
/usr/share/doc/fasta3/examples/sql/README
/usr/share/fasta3/data/blosum45.mat
/usr/share/fasta3/data/blosum50.mat
/usr/share/fasta3/data/blosum62.mat
/usr/share/fasta3/data/blosum80.mat
/usr/share/fasta3/data/dna.mat
/usr/share/fasta3/data/idn_aa.mat
/usr/share/fasta3/data/md_10.mat
/usr/share/fasta3/data/md_20.mat
/usr/share/fasta3/data/md_40.mat
/usr/share/fasta3/data/pam120.mat
/usr/share/fasta3/data/pam250.mat
/usr/share/fasta3/data/rna.mat
/usr/share/fasta3/data/VTML_10.mat
/usr/share/fasta3/data/VTML_120.mat
/usr/share/fasta3/data/vtml160.mat
/usr/share/fasta3/data/VTML_160.mat
/usr/share/fasta3/data/VTML_200.mat
/usr/share/fasta3/data/VTML_20.mat
/usr/share/fasta3/data/VTML_40.mat
/usr/share/fasta3/data/VTML_80.mat
/usr/share/fasta3/misc/parse_m9.pl
/usr/share/fasta3/misc/README
/usr/share/fasta3/misc/res2R.pl
/usr/share/fasta3/misc/shuffle_embed.pl
/usr/share/fasta3/scripts/acc_examples
/usr/share/fasta3/scripts/ann_exons_all.pl
/usr/share/fasta3/scripts/ann_exons_ens.pl
/usr/share/fasta3/scripts/ann_exons_ncbi.pl
/usr/share/fasta3/scripts/ann_exons_up_sql.pl
/usr/share/fasta3/scripts/ann_exons_up_sql_www.pl
/usr/share/fasta3/scripts/ann_exons_up_www.pl
/usr/share/fasta3/scripts/ann_feats2ipr_e.pl
/usr/share/fasta3/scripts/ann_feats2ipr.pl
/usr/share/fasta3/scripts/ann_feats_up_sql.pl
/usr/share/fasta3/scripts/ann_feats_up_www2.pl
/usr/share/fasta3/scripts/ann_ipr_www.pl
/usr/share/fasta3/scripts/annot_blast_btop2.pl
/usr/share/fasta3/scripts/annot_blast_btop3.py
/usr/share/fasta3/scripts/annot_blast_btop4.py
/usr/share/fasta3/scripts/ann_pdb_cath.pl
/usr/share/fasta3/scripts/ann_pdb_vast.pl
/usr/share/fasta3/scripts/ann_pfam28.pl
/usr/share/fasta3/scripts/ann_pfam30_tmptbl.pl
/usr/share/fasta3/scripts/ann_pfam_sql.pl
/usr/share/fasta3/scripts/ann_pfam_sql.py
/usr/share/fasta3/scripts/ann_pfam_www.pl
/usr/share/fasta3/scripts/ann_pfam_www.py
/usr/share/fasta3/scripts/ann_script_list
/usr/share/fasta3/scripts/ann_upfeats_pfam_www_e.pl
/usr/share/fasta3/scripts/blastp_annot_cmd.sh
/usr/share/fasta3/scripts/blastp_cmd.sh
/usr/share/fasta3/scripts/color_defs.pl
/usr/share/fasta3/scripts/expand_links.pl
/usr/share/fasta3/scripts/expand_refseq_isoforms.pl
/usr/share/fasta3/scripts/expand_uniref50.pl
/usr/share/fasta3/scripts/expand_up_isoforms.pl
/usr/share/fasta3/scripts/exp_up_ensg.pl
/usr/share/fasta3/scripts/fasta_annot_cmd.sh
/usr/share/fasta3/scripts/get_genome_seq.py
/usr/share/fasta3/scripts/get_protein.py
/usr/share/fasta3/scripts/get_protein_sql.py
/usr/share/fasta3/scripts/get_protein_sql_www.py
/usr/share/fasta3/scripts/get_refseq.py
/usr/share/fasta3/scripts/get_uniprot.py
/usr/share/fasta3/scripts/get_up_prot_iso_sql.py
/usr/share/fasta3/scripts/lav2plt.pl
/usr/share/fasta3/scripts/lavplt_ps.pl
/usr/share/fasta3/scripts/lavplt_svg.pl
/usr/share/fasta3/scripts/links2sql.pl
/usr/share/fasta3/scripts/m8_btop_msa.pl
/usr/share/fasta3/scripts/m8CBl_to_plot2.R
/usr/share/fasta3/scripts/m9B_btop_msa.pl
/usr/share/fasta3/scripts/map_exon_coords.py
/usr/share/fasta3/scripts/merge_blast_btab.pl
/usr/share/fasta3/scripts/merge_fasta_btab.pl
/usr/share/fasta3/scripts/plot_domain2t.cgi
/usr/share/fasta3/scripts/README
/usr/share/fasta3/scripts/README.scripts
/usr/share/fasta3/scripts/relabel_domains.py
/usr/share/fasta3/scripts/rename_exons.py
/usr/share/fasta3/scripts/summ_domain_ident.pl
/usr/share/fasta3/scripts/test_ann_scripts.sh
/usr/share/fasta3/scripts/test_py.sh
/usr/share/man/man1/fasta36.1.gz
/usr/share/man/man1/fastf3.1.gz
/usr/share/man/man1/fasts3.1.gz
/usr/share/man/man1/map_db.1.gz
/usr/share/man/man1/prss3.1.gz
/usr/share/man/man1/ps_lav.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testen Image mit fasta3 bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
36.3.8i.14-Nov-2020-3	trixie / main	amd64	Debian 13 · main · amd64	955 KiB	7.0 MiB	pool/main/f/fasta3/fasta3_36.3.8i.14-Nov-2020-3_amd64.deb
36.3.8i.14-Nov-2020-3	trixie / main	arm64	Debian 13 · main · arm64	865 KiB	7.0 MiB	pool/main/f/fasta3/fasta3_36.3.8i.14-Nov-2020-3_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

36.3.8i.14-Nov-2020-3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: cf25e232d1575fb53a6008d09789981c845be26abd7ec3915c1aa5594088c86f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'cf25e232d1575fb53a6008d09789981c845be26abd7ec3915c1aa5594088c86f' 'fasta3_36.3.8i.14-Nov-2020-3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

36.3.8i.14-Nov-2020-3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: fe3b88381d4c2cc807504d2965870b9824413413c166b51694bcbb6f446076a2

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'fe3b88381d4c2cc807504d2965870b9824413413c166b51694bcbb6f446076a2' 'fasta3_36.3.8i.14-Nov-2020-3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified