Debian 13 (Trixie) native package

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping

Packages / Debian 13 (Trixie) / science / freebayes

Package: freebayes (1.3.9-1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Bayesian haplotype-based polymorphism discovery and genotyping

Other Packages Related to freebayes:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libseqlib2] (>= 1.2.0)
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
dep: [libstdc++6] (>= 13.1)
GNU Standard C++ Library v3
dep: [libtabixpp0t64] (>= 1.0.0)
C++ wrapper to tabix indexer
dep: [libvcflib2] (>= 1.0.12+dfsg)
C++ library for parsing and manipulating VCF files
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [python3]
interactive high-level object-oriented language (default python3 version)

rec: [parallel]
build and execute command lines from standard input in parallel

Download freebayes

Architecture	Package Size	Installed Size	Files
amd64	1.5 MiB	4.0 MiB	[list of files]
arm64	1.4 MiB	4.0 MiB	[list of files]

Paketdateipfade (75)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/bamleftalign
/usr/bin/freebayes
/usr/share/doc/freebayes/changelog.Debian.gz
/usr/share/doc/freebayes/copyright
/usr/share/doc/freebayes/examples/data/targets.bed
/usr/share/doc/freebayes/examples/data/test.alt
/usr/share/doc/freebayes/examples/data/test.bam
/usr/share/doc/freebayes/examples/data/test.bam.bai
/usr/share/doc/freebayes/examples/data/test.bed
/usr/share/doc/freebayes/examples/data/test.ref
/usr/share/doc/freebayes/examples/data/test.ref.fai
/usr/share/doc/freebayes/examples/data/test.vcf
/usr/share/doc/freebayes/examples/freebayes-env.yaml
/usr/share/doc/freebayes/examples/performance/benchmark.md
/usr/share/doc/freebayes/examples/pipeline.sh
/usr/share/doc/freebayes/examples/README.test_data
/usr/share/doc/freebayes/examples/regression/NA12878.chr22.tiny.vcf
/usr/share/doc/freebayes/examples/regression/README.md
/usr/share/doc/freebayes/examples/runner.sh
/usr/share/doc/freebayes/examples/snakemake-freebayes-parallel.smk
/usr/share/doc/freebayes/examples/splice/1:883884-887618.bam
/usr/share/doc/freebayes/examples/splice/1:883884-887618.bam.bai
/usr/share/doc/freebayes/examples/splice/1:883884-887618.fa
/usr/share/doc/freebayes/examples/splice/1:883884-887618.fa.fai
/usr/share/doc/freebayes/examples/t/00_region_and_target_handling.t
/usr/share/doc/freebayes/examples/t/01b_call_variants.t
/usr/share/doc/freebayes/examples/t/01_call_variants.t
/usr/share/doc/freebayes/examples/t/02_multi_bam.t
/usr/share/doc/freebayes/examples/t/03_reference_bases.t
/usr/share/doc/freebayes/examples/targets.bed
/usr/share/doc/freebayes/examples/test.alt
/usr/share/doc/freebayes/examples/test.bam
/usr/share/doc/freebayes/examples/test.bam.bai
/usr/share/doc/freebayes/examples/test.bed
/usr/share/doc/freebayes/examples/test.ref
/usr/share/doc/freebayes/examples/test.ref.fai
/usr/share/doc/freebayes/examples/test.vcf
/usr/share/doc/freebayes/examples/tiny/1read.bam
/usr/share/doc/freebayes/examples/tiny/1read.bam.bai
/usr/share/doc/freebayes/examples/tiny/hla.fa
/usr/share/doc/freebayes/examples/tiny/hla.fa.fai
/usr/share/doc/freebayes/examples/tiny/hla.vcf.gz
/usr/share/doc/freebayes/examples/tiny/hla.vcf.gz.tbi
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam.bai
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.cram
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.giab.vcf
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam.bai
/usr/share/doc/freebayes/examples/tiny/q.fa
/usr/share/doc/freebayes/examples/tiny/q.fa.fai
/usr/share/doc/freebayes/examples/tiny/q.regions
/usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz
/usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz.tbi
/usr/share/doc/freebayes/examples/tiny/q.vcf.gz
/usr/share/doc/freebayes/examples/tiny/q.vcf.gz.tbi
/usr/share/doc/freebayes/examples/tiny/q with spaces.fa
/usr/share/doc/freebayes/examples/tiny/q with spaces.fa.fai
/usr/share/doc/freebayes/examples/tiny/q with spaces.regions
/usr/share/doc/freebayes/README.md.gz
/usr/share/doc/freebayes/README.test
/usr/share/doc/freebayes/README.test_data
/usr/share/doc/freebayes/RELEASE-NOTES.md.gz
/usr/share/doc/freebayes/run-unit-test.gz
/usr/share/freebayes/scripts/bgziptabix
/usr/share/freebayes/scripts/coverage_to_regions.py
/usr/share/freebayes/scripts/fasta_generate_regions.py
/usr/share/freebayes/scripts/freebayes-parallel
/usr/share/freebayes/scripts/generate_freebayes_region_scripts.sh
/usr/share/freebayes/scripts/GenerateFreebayesRegions.R
/usr/share/freebayes/scripts/sam_add_rg.pl
/usr/share/freebayes/scripts/samples.cnv
/usr/share/freebayes/scripts/split_ref_by_bai_datasize.py
/usr/share/freebayes/scripts/update_version.sh
/usr/share/freebayes/scripts/vcffirstheader

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testen Image mit freebayes bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.3.9-1	trixie / main	amd64	Debian 13 · main · amd64	1.5 MiB	4.0 MiB	pool/main/f/freebayes/freebayes_1.3.9-1_amd64.deb
1.3.9-1	trixie / main	arm64	Debian 13 · main · arm64	1.4 MiB	4.0 MiB	pool/main/f/freebayes/freebayes_1.3.9-1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.3.9-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: f67b2fb1950ec9a48aec3a65f18c396124a02f0b0439a29a1b15585bf9d87a6b

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'f67b2fb1950ec9a48aec3a65f18c396124a02f0b0439a29a1b15585bf9d87a6b' 'freebayes_1.3.9-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.3.9-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 46714c75e681c4f48c5eedd7a3eb3afb270198fa09685e0c7d745ae67b8a1001

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '46714c75e681c4f48c5eedd7a3eb3afb270198fa09685e0c7d745ae67b8a1001' 'freebayes_1.3.9-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified