Linux workstation

Debian 13 (Trixie) native package

infernal

inference of RNA secondary structural alignments

Packages / Debian 13 (Trixie) / science / infernal

Package: infernal (1.1.5-3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [eddylab.org]

inference of RNA secondary structural alignments

Other Packages Related to infernal:

  • dep: [libc6] (>= 2.34)

    GNU C Library: Shared libraries

Download infernal

ArchitecturePackage SizeInstalled SizeFiles
amd645.7 MiB51 MiB[list of files]
arm645.3 MiB49 MiB[list of files]

Paketdateipfade (209)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/cmalign
  • /usr/bin/cmbuild
  • /usr/bin/cmcalibrate
  • /usr/bin/cmconvert
  • /usr/bin/cmemit
  • /usr/bin/cmfetch
  • /usr/bin/cmpress
  • /usr/bin/cmscan
  • /usr/bin/cmsearch
  • /usr/bin/cmstat
  • /usr/lib/aarch64-linux-gnu/infernal/examples/easel/miniapps/esl-reformat
  • /usr/lib/aarch64-linux-gnu/infernal/examples/easel/miniapps/esl-sfetch
  • /usr/lib/aarch64-linux-gnu/infernal/examples/easel/miniapps/esl-shuffle
  • /usr/lib/aarch64-linux-gnu/infernal/examples/src/bandcyk-montecarlo-test
  • /usr/lib/aarch64-linux-gnu/infernal/examples/src/bandcyk-truncation-test
  • /usr/lib/aarch64-linux-gnu/infernal/examples/src/cm_tophits_utest
  • /usr/lib/aarch64-linux-gnu/infernal/examples/src/cp9-test
  • /usr/lib/aarch64-linux-gnu/infernal/examples/src/itest_brute
  • /usr/lib/aarch64-linux-gnu/infernal/examples/src/sub_cm-test
  • /usr/lib/infernal/cmalign
  • /usr/lib/infernal/cmbuild
  • /usr/lib/infernal/cmcalibrate
  • /usr/lib/infernal/cmconvert
  • /usr/lib/infernal/cmemit
  • /usr/lib/infernal/cmfetch
  • /usr/lib/infernal/cmpress
  • /usr/lib/infernal/cmscan
  • /usr/lib/infernal/cmsearch
  • /usr/lib/infernal/cmstat
  • /usr/lib/x86_64-linux-gnu/infernal/examples/easel/miniapps/esl-reformat
  • /usr/lib/x86_64-linux-gnu/infernal/examples/easel/miniapps/esl-sfetch
  • /usr/lib/x86_64-linux-gnu/infernal/examples/easel/miniapps/esl-shuffle
  • /usr/lib/x86_64-linux-gnu/infernal/examples/src/bandcyk-montecarlo-test
  • /usr/lib/x86_64-linux-gnu/infernal/examples/src/bandcyk-truncation-test
  • /usr/lib/x86_64-linux-gnu/infernal/examples/src/cm_tophits_utest
  • /usr/lib/x86_64-linux-gnu/infernal/examples/src/cp9-test
  • /usr/lib/x86_64-linux-gnu/infernal/examples/src/itest_brute
  • /usr/lib/x86_64-linux-gnu/infernal/examples/src/sub_cm-test
  • /usr/share/doc/infernal/changelog.Debian.gz
  • /usr/share/doc/infernal/copyright
  • /usr/share/doc/infernal/examples/easel
  • /usr/share/doc/infernal/examples/sqc
  • /usr/share/doc/infernal/examples/src
  • /usr/share/doc/infernal/examples/testsuite/00README
  • /usr/share/doc/infernal/examples/testsuite/100k-4.fa
  • /usr/share/doc/infernal/examples/testsuite/10k-4.fa
  • /usr/share/doc/infernal/examples/testsuite/10k-tRNA.fa
  • /usr/share/doc/infernal/examples/testsuite/10k-Vault.fa
  • /usr/share/doc/infernal/examples/testsuite/1k-4.fa
  • /usr/share/doc/infernal/examples/testsuite/1k.fa
  • /usr/share/doc/infernal/examples/testsuite/1k-snR75.fa
  • /usr/share/doc/infernal/examples/testsuite/1k-tRNA.fa
  • /usr/share/doc/infernal/examples/testsuite/1k-Vault.fa
  • /usr/share/doc/infernal/examples/testsuite/2accn.list
  • /usr/share/doc/infernal/examples/testsuite/2.list
  • /usr/share/doc/infernal/examples/testsuite/2name.list
  • /usr/share/doc/infernal/examples/testsuite/3.4.12.rf.stk
  • /usr/share/doc/infernal/examples/testsuite/3trnas.embl
  • /usr/share/doc/infernal/examples/testsuite/3trnas.gb
  • /usr/share/doc/infernal/examples/testsuite/4.1p0.c.cm
  • /usr/share/doc/infernal/examples/testsuite/4.1p0.cm
  • /usr/share/doc/infernal/examples/testsuite/4.c.cm
  • /usr/share/doc/infernal/examples/testsuite/4.sto
  • /usr/share/doc/infernal/examples/testsuite/5.c.cm
  • /usr/share/doc/infernal/examples/testsuite/5.claninfo
  • /usr/share/doc/infernal/examples/testsuite/at25.null
  • /usr/share/doc/infernal/examples/testsuite/at4.null
  • /usr/share/doc/infernal/examples/testsuite/bug-i11.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i12.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i13.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i14.fa
  • /usr/share/doc/infernal/examples/testsuite/bug-i14.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i14.sto
  • /usr/share/doc/infernal/examples/testsuite/bug-i15.fa
  • /usr/share/doc/infernal/examples/testsuite/bug-i15.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i15.sto
  • /usr/share/doc/infernal/examples/testsuite/bug-i1.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i28.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i28.fa
  • /usr/share/doc/infernal/examples/testsuite/bug-i28.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i29.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i29.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i2.fa
  • /usr/share/doc/infernal/examples/testsuite/bug-i2.sto
  • /usr/share/doc/infernal/examples/testsuite/bug-i30.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i31.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i31.fa
  • /usr/share/doc/infernal/examples/testsuite/bug-i31.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i32.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i33.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i33.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i34.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i34.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i36.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i36.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i37.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i37.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i38.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i39.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i43.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i43.fa
  • /usr/share/doc/infernal/examples/testsuite/bug-i43.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i44.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i45a.fa
  • /usr/share/doc/infernal/examples/testsuite/bug-i45b.fa
  • /usr/share/doc/infernal/examples/testsuite/bug-i45.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i45.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i47.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i49.cm
  • /usr/share/doc/infernal/examples/testsuite/bug-i49.fa
  • /usr/share/doc/infernal/examples/testsuite/bug-i49.pl
  • /usr/share/doc/infernal/examples/testsuite/bug-i49.sto
  • /usr/share/doc/infernal/examples/testsuite/dev_testsuite.sqc
  • /usr/share/doc/infernal/examples/testsuite/emitted-3pkhavs.fa
  • /usr/share/doc/infernal/examples/testsuite/emitted-4.fa
  • /usr/share/doc/infernal/examples/testsuite/emitted-5.fa
  • /usr/share/doc/infernal/examples/testsuite/emitted-snR75.fa
  • /usr/share/doc/infernal/examples/testsuite/emitted-tRNA.fa
  • /usr/share/doc/infernal/examples/testsuite/emitted-Vault.fa
  • /usr/share/doc/infernal/examples/testsuite/ffs-ecoli.fa
  • /usr/share/doc/infernal/examples/testsuite/ffs-frag.fa
  • /usr/share/doc/infernal/examples/testsuite/i1.pm
  • /usr/share/doc/infernal/examples/testsuite/iss21-cmbuild-rf-msaweight-pb.py
  • /usr/share/doc/infernal/examples/testsuite/iss33.cm
  • /usr/share/doc/infernal/examples/testsuite/iss33.fa
  • /usr/share/doc/infernal/examples/testsuite/iss33-trunc-pipeline.pl
  • /usr/share/doc/infernal/examples/testsuite/iss34-bld-frg-slf-ins.pl
  • /usr/share/doc/infernal/examples/testsuite/iss34.sto
  • /usr/share/doc/infernal/examples/testsuite/itest10-build-frags.pl
  • /usr/share/doc/infernal/examples/testsuite/itest11-search-frags.pl
  • /usr/share/doc/infernal/examples/testsuite/itest1-cmalign-mapali.pl
  • /usr/share/doc/infernal/examples/testsuite/itest2-duplicate-names.pl
  • /usr/share/doc/infernal/examples/testsuite/itest3-msa-integrity.pl
  • /usr/share/doc/infernal/examples/testsuite/itest4-stdin.pl
  • /usr/share/doc/infernal/examples/testsuite/itest5-pipeline.pl
  • /usr/share/doc/infernal/examples/testsuite/itest6-sensitivity.pl
  • /usr/share/doc/infernal/examples/testsuite/itest7-trunc.pl
  • /usr/share/doc/infernal/examples/testsuite/itest8-glist.pl
  • /usr/share/doc/infernal/examples/testsuite/itest9-overlaps.pl
  • /usr/share/doc/infernal/examples/testsuite/Makefile
  • /usr/share/doc/infernal/examples/testsuite/Makefile.in
  • /usr/share/doc/infernal/examples/testsuite/mito-ascaris.fa
  • /usr/share/doc/infernal/examples/testsuite/mito-ascaris.gb
  • /usr/share/doc/infernal/examples/testsuite/parse_test_results.py
  • /usr/share/doc/infernal/examples/testsuite/PK-HAV.sto
  • /usr/share/doc/infernal/examples/testsuite/Plant_SRP.1p0.c.cm
  • /usr/share/doc/infernal/examples/testsuite/Plant_SRP.1p0.cm
  • /usr/share/doc/infernal/examples/testsuite/Plant_SRP.c.cm
  • /usr/share/doc/infernal/examples/testsuite/Plant_SRP.sto
  • /usr/share/doc/infernal/examples/testsuite/plus1.prior
  • /usr/share/doc/infernal/examples/testsuite/Rfam.12.1.clanin
  • /usr/share/doc/infernal/examples/testsuite/Rfam.14.1.clanin
  • /usr/share/doc/infernal/examples/testsuite/RIBOSUM85-60.mat
  • /usr/share/doc/infernal/examples/testsuite/rnaseP-bsu.fa
  • /usr/share/doc/infernal/examples/testsuite/rnaseP-eubact.c.cm
  • /usr/share/doc/infernal/examples/testsuite/rnaseP-eubact.sto
  • /usr/share/doc/infernal/examples/testsuite/rnaseP-frag.fa
  • /usr/share/doc/infernal/examples/testsuite/RNaseP.sto
  • /usr/share/doc/infernal/examples/testsuite/se.1.sto
  • /usr/share/doc/infernal/examples/testsuite/se.dbl.sto
  • /usr/share/doc/infernal/examples/testsuite/se.fa
  • /usr/share/doc/infernal/examples/testsuite/se.frag1.sto
  • /usr/share/doc/infernal/examples/testsuite/se.frag2.sto
  • /usr/share/doc/infernal/examples/testsuite/se.frag3.sto
  • /usr/share/doc/infernal/examples/testsuite/se.noss.sto
  • /usr/share/doc/infernal/examples/testsuite/se.rf.sto
  • /usr/share/doc/infernal/examples/testsuite/se.sto
  • /usr/share/doc/infernal/examples/testsuite/snR75.1p0.c.cm
  • /usr/share/doc/infernal/examples/testsuite/snR75.1p0.cm
  • /usr/share/doc/infernal/examples/testsuite/snR75.3.fa
  • /usr/share/doc/infernal/examples/testsuite/snR75.c.cm
  • /usr/share/doc/infernal/examples/testsuite/snR75.sto
  • /usr/share/doc/infernal/examples/testsuite/srp-euk.c.cm
  • /usr/share/doc/infernal/examples/testsuite/srp-euk.sto
  • /usr/share/doc/infernal/examples/testsuite/ssu.sto
  • /usr/share/doc/infernal/examples/testsuite/test.hprior
  • /usr/share/doc/infernal/examples/testsuite/testsuite.sqc
  • /usr/share/doc/infernal/examples/testsuite/tremitted-Plant_SRP.fa
  • /usr/share/doc/infernal/examples/testsuite/tremitted-Vault.fa
  • /usr/share/doc/infernal/examples/testsuite/tRNA1415G.c.cm
  • /usr/share/doc/infernal/examples/testsuite/tRNA1415G.sto
  • /usr/share/doc/infernal/examples/testsuite/tRNA.1p0.c.cm
  • /usr/share/doc/infernal/examples/testsuite/tRNA.1p0.cm
  • /usr/share/doc/infernal/examples/testsuite/trna-2.sto
  • /usr/share/doc/infernal/examples/testsuite/tRNA.c.cm
  • /usr/share/doc/infernal/examples/testsuite/trna.list
  • /usr/share/doc/infernal/examples/testsuite/tRNA-Sec.c.cm
  • /usr/share/doc/infernal/examples/testsuite/tRNA.sto
  • /usr/share/doc/infernal/examples/testsuite/trna.xmask
  • /usr/share/doc/infernal/examples/testsuite/Vault.1p0.c.cm
  • /usr/share/doc/infernal/examples/testsuite/Vault.1p0.cm
  • /usr/share/doc/infernal/examples/testsuite/Vault.c.cm
  • /usr/share/doc/infernal/examples/testsuite/vault.fa
  • /usr/share/doc/infernal/examples/testsuite/Vault.sto
  • /usr/share/doc/infernal/README.Debian
  • /usr/share/doc/infernal/README.md
  • /usr/share/doc/infernal/RELEASE-1.1.5.md.gz
  • /usr/share/doc/infernal/TODO.Debian
  • /usr/share/man/man1/cmalign.1.gz
  • /usr/share/man/man1/cmbuild.1.gz
  • /usr/share/man/man1/cmcalibrate.1.gz
  • /usr/share/man/man1/cmconvert.1.gz
  • /usr/share/man/man1/cmemit.1.gz
  • /usr/share/man/man1/cmfetch.1.gz
  • /usr/share/man/man1/cmpress.1.gz
  • /usr/share/man/man1/cmscan.1.gz
  • /usr/share/man/man1/cmsearch.1.gz
  • /usr/share/man/man1/cmstat.1.gz
  • /usr/share/man/man1/infernal.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.1.5-3trixie / mainamd64Debian 13 · main · amd645.7 MiB51 MiBpool/main/i/infernal/infernal_1.1.5-3_amd64.deb
1.1.5-3trixie / mainarm64Debian 13 · main · arm645.3 MiB49 MiBpool/main/i/infernal/infernal_1.1.5-3_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.1.5-3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: b2209c38d4b0b5158751a8575beca71463fee563dc5e77d8380a2063aeb94d5e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'b2209c38d4b0b5158751a8575beca71463fee563dc5e77d8380a2063aeb94d5e' 'infernal_1.1.5-3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.1.5-3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: a898b4b910be707fcec94400b1a50a1c07f6bbe91ef961322471490cd9440d65

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'a898b4b910be707fcec94400b1a50a1c07f6bbe91ef961322471490cd9440d65' 'infernal_1.1.5-3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified