Debian 13 (Trixie) native package

ivar

functions broadly useful for viral amplicon-based sequencing

Packages / Debian 13 (Trixie) / science / ivar

Package: ivar

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

functions broadly useful for viral amplicon-based sequencing

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Paketdateipfade (63)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/ivar
/usr/share/doc/ivar/changelog.Debian.gz
/usr/share/doc/ivar/COOKBOOK.md
/usr/share/doc/ivar/copyright
/usr/share/doc/ivar/examples/data/db/test_ref.fa
/usr/share/doc/ivar/examples/data/db/test_ref.fa.fai
/usr/share/doc/ivar/examples/data/pair_info_2.tsv
/usr/share/doc/ivar/examples/data/pair_information.tsv
/usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam
/usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam.bai
/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed
/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair_trim.tsv
/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair_trim.untrimmed.bam
/usr/share/doc/ivar/examples/data/test_amplicon.sorted.bam
/usr/share/doc/ivar/examples/data/test.bed
/usr/share/doc/ivar/examples/data/test.filtered.tsv
/usr/share/doc/ivar/examples/data/test.gap.fa
/usr/share/doc/ivar/examples/data/test.gap.qual.txt
/usr/share/doc/ivar/examples/data/test.gap.sorted.bam
/usr/share/doc/ivar/examples/data/test.gap.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test.gap.sorted.mpileup
/usr/share/doc/ivar/examples/data/test.gff
/usr/share/doc/ivar/examples/data/test.indel2.tsv
/usr/share/doc/ivar/examples/data/test.indel3.tsv
/usr/share/doc/ivar/examples/data/test.indel4.tsv
/usr/share/doc/ivar/examples/data/test.indel.mpileup
/usr/share/doc/ivar/examples/data/test.indel.tsv
/usr/share/doc/ivar/examples/data/test_isize.bed
/usr/share/doc/ivar/examples/data/test_isize.sorted.bam
/usr/share/doc/ivar/examples/data/test.masked_primer_indices.txt
/usr/share/doc/ivar/examples/data/test_merged.bed
/usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam
/usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test.sorted.bam
/usr/share/doc/ivar/examples/data/test.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test_strand.gff
/usr/share/doc/ivar/examples/data/test.strand.pileup
/usr/share/doc/ivar/examples/data/test_strand.tsv
/usr/share/doc/ivar/examples/data/test.trimmed.masked.bam
/usr/share/doc/ivar/examples/data/test.trimmed.masked.bam.bai
/usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam
/usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam
/usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test_unpaired.sorted.bam
/usr/share/doc/ivar/examples/data/test_unpaired.sorted.bam.bai
/usr/share/doc/ivar/examples/data/trim_isize.bam
/usr/share/doc/ivar/examples/ref/out-consensus.fa
/usr/share/doc/ivar/examples/ref/out-consensus.qual.txt
/usr/share/doc/ivar/examples/ref/out-filtered.tsv
/usr/share/doc/ivar/examples/ref/out-getmasked.txt
/usr/share/doc/ivar/examples/ref/out-removereads.sam
/usr/share/doc/ivar/examples/ref/out-trim2.sam
/usr/share/doc/ivar/examples/ref/out-trim.sam
/usr/share/doc/ivar/examples/ref/out-variants.tsv
/usr/share/doc/ivar/examples/ref/README.test_data
/usr/share/doc/ivar/MANUAL.md.gz
/usr/share/doc/ivar/README
/usr/share/doc/ivar/README.md.gz
/usr/share/doc/ivar/README.test
/usr/share/doc/ivar/README.test_data
/usr/share/doc/ivar/run-unit-test
/usr/share/man/man1/ivar.1.gz

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testen Image mit ivar bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified