Packages / Debian 13 (Trixie) / science / multiqc
Package: multiqc (1.21+dfsg-2)
Maintainers:
External Resources:
Homepage: [multiqc.info]
output integration for RNA sequencing across tools and samples
Other Packages Related to multiqc:
dep: [python3-click]
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dep: [python3-coloredlogs]
colored terminal output for Python 3's logging module
dep: [python3-humanize]
Python Humanize library (Python 3)
dep: [python3-importlib-metadata]
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dep: [python3-jinja2]
small but fast and easy to use stand-alone template engine
dep: [python3-markdown]
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dep: [python3-matplotlib]
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dep: [python3-numpy]
Python library for numerical computations (Python 3)
dep: [python3-packaging]
core utilities for python3 packages
dep: [python3-pil]
Python Imaging Library (Python3)
dep: [python3-plotly]
Python 3 plotting library for publication-quality graphs
dep: [python3-pyaml-env]
Python3 YAML configuration with environment variables parsing
dep: [python3-requests]
elegant and simple HTTP library for Python3, built for human beings
dep: [python3-rich]
render rich text, tables, progress bars, syntax highlighting, markdown and more
dep: [python3-rich-click]
creating beautiful command line interfaces for Python3
dep: [python3-spectra]
Easy color scales and color conversion for Python (Python 3 version)
dep: [python3-yaml]
YAML parser and emitter for Python3
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [python3-lzstring]
LZ-based compression algorithm for Python (Python 3 version)
dep: [python3-humanfriendly]
Python3 library to make user friendly text interfaces
dep: [fonts-glyphicons-halflings]
icons made for smaller graphic
dep: [libjs-bootstrap]
HTML, CSS and JS framework
dep: [libjs-jquery]
JavaScript library for dynamic web applications
dep: [libjs-jquery-tablesorter]
jQuery flexible client-side table sorting plugin
dep: [libjs-jquery-ui]
JavaScript UI library for dynamic web applications
rec: [node-clipboard]
Node.js module to copy to clipboard without flash
rec: [libjs-filesaver]
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rec: [pandoc]
general markup converter
rec: [texlive-xetex]
TeX Live: XeTeX and packages
enh: [adapterremoval]
rapid adapter trimming, identification, and read merging of gene sequences
enh: afterqc
Package not available
enh: [bamtools]
toolkit for manipulating BAM (genome alignment) files
enh: [bbmap]
BBTools genomic aligner and other tools for short sequences
enh: [bcftools]
genomic variant calling and manipulation of VCF/BCF files
enh: bcl2fastq
Package not available
enh: [biobambam2]
tools for early stage alignment file processing
enh: biobloomtools
Package not available
enh: biscuit
Package not available
enh: bismark
Package not available
enh: [bowtie]
Ultrafast memory-efficient short read aligner
enh: [bowtie2]
ultrafast memory-efficient short read aligner
enh: [busco]
benchmarking sets of universal single-copy orthologs
enh: clipandmerge
Package not available
enh: clusterflow
Package not available
enh: conpair
Package not available
enh: [cutadapt]
Clean biological sequences from high-throughput sequencing reads
enh: damageprofiler
Package not available
enh: dedup
Package not available
enh: deeptools
Package not available
enh: disambiguate
Package not available
enh: dragen
Package not available
enh: [fastp]
Ultra-fast all-in-one FASTQ preprocessor
enh: fastq-screen
Package not available
enh: [fastqc]
quality control for high throughput sequence data
enh: featurecounts
Package not available
enh: fgbio
Package not available
enh: [flash]
Fast Length Adjustment of SHort reads
enh: [flexbar]
flexible barcode and adapter removal for sequencing platforms
enh: gatk
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enh: goleft-indexcov
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enh: [happy]
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enh: hicexplorer
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enh: hicpro
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enh: hicup
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graph-based alignment of short nucleotide reads to many genomes
enh: homer
Package not available
enh: htseq
Package not available
enh: interop
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functions broadly useful for viral amplicon-based sequencing
enh: [jellyfish]
count k-mers in DNA sequences
enh: kaiju
Package not available
enh: [kallisto]
near-optimal RNA-Seq quantification
enh: kat
Package not available
enh: [kraken]
assigning taxonomic labels to short DNA sequences
enh: leehom
Package not available
enh: longranger
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enh: macs2
Package not available
enh: [malt]
sequence alignment and analysis tool to process sequencing data
enh: methylqa
Package not available
enh: minionqc
Package not available
enh: [mirtop]
annotate miRNAs with a standard mirna/isomir naming
enh: mirtrace
Package not available
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Package not available
enh: mtnucratio
Package not available
enh: multivcfanalyzer
Package not available
enh: peddy
Package not available
enh: phantompeakqualtools
Package not available
enh: [picard-tools]
Command line tools to manipulate SAM and BAM files
enh: preseq
Package not available
enh: [prokka]
rapid annotation of prokaryotic genomes
enh: [pycoqc]
computes metrics and generates Interactive QC plots
enh: qorts
Package not available
enh: qualimap
Package not available
enh: quast
Package not available
enh: rna-seqc
Package not available
enh: [rna-star]
ultrafast universal RNA-seq aligner
enh: [rockhopper]
system for analyzing bacterial RNA-seq data
enh: [rsem]
RNA-Seq by Expectation-Maximization
enh: rseqc
Package not available
enh: [salmon]
wicked-fast transcript quantification from RNA-seq data
enh: [samblaster]
marks duplicates, extracts discordant/split reads
enh: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats
enh: sargasso
Package not available
enh: seqyclean
Package not available
enh: sexdeterrmine
Package not available
enh: [sickle]
windowed adaptive trimming tool for FASTQ files using quality
enh: [skewer]
post-processing of high-throughput DNA sequence reads
enh: slamdunk
Package not available
enh: [snpeff]
genetic variant annotation and effect prediction toolbox - tool
enh: snpsplit
Package not available
enh: somalier
Package not available
enh: [sortmerna]
tool for filtering, mapping and OTU-picking NGS reads
enh: [stacks]
pipeline for building loci from short-read DNA sequences
enh: supernova
Package not available
enh: theta2
Package not available
enh: [trimmomatic]
flexible read trimming tool for Illumina NGS data
enh: varscan2
Package not available
enh: [vcftools]
Collection of tools to work with VCF files
enh: verifybamid
Package not available
Download multiqc
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 763 KiB | 3.9 MiB | [list of files] |
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Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3