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Debian 13 (Trixie) native package

r-bioc-biostrings

GNU R string objects representing biological sequences

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-biostrings

Package: r-bioc-biostrings (2.74.1+dfsg-2)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

GNU R string objects representing biological sequences

Other Packages Related to r-bioc-biostrings:

  • dep: r-api-4.0

    Package not available

  • dep: r-api-bioc-3.20

    Package not available

  • dep: [r-bioc-biocgenerics] (>= 0.37.0)

    generic functions for Bioconductor

  • dep: [r-bioc-s4vectors] (>= 0.27.12)

    BioConductor S4 implementation of vectors and lists

  • dep: [r-bioc-iranges] (>= 2.31.2)

    GNU R low-level containers for storing sets of integer ranges

  • dep: [r-bioc-xvector] (>= 0.37.1)

    BioConductor representation and manpulation of external sequences

  • dep: [r-bioc-genomeinfodb]

    BioConductor utilities for manipulating chromosome identifiers

  • dep: [r-cran-crayon]

    GNU R colored terminal output

  • dep: [libc6] (>= 2.14)

    GNU C Library: Shared libraries

  • sug: [r-bioc-pwalign]

    Perform pairwise sequence alignments

  • sug: [r-bioc-bsgenome] (>= 1.13.14)

    BioConductor infrastructure for Biostrings-based genome data packages

  • sug: [r-bioc-genomicfeatures] (>= 1.3.14)

    GNU R tools for making and manipulating transcript centric annotations

  • sug: [r-bioc-affy] (>= 1.41.3)

    BioConductor methods for Affymetrix Oligonucleotide Arrays

  • sug: [r-cran-runit]

    GNU R package providing unit testing framework

  • sug: [r-bioc-biocstyle]

    standard styles for vignettes and other Bioconductor documents

  • sug: [r-cran-knitr]

    GNU R package for dynamic report generation using Literate Programming

  • sug: [r-cran-testthat] (>= 3.0.0)

    GNU R testsuite

  • sug: [r-cran-covr]

    test coverage for GNU R packages

Download r-bioc-biostrings

ArchitecturePackage SizeInstalled SizeFiles
amd6413 MiB14 MiB[list of files]
arm6413 MiB14 MiB[list of files]

Paketdateipfade (69)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/lib/R/site-library/Biostrings/data/BLOSUM100.rda
  • /usr/lib/R/site-library/Biostrings/data/BLOSUM45.rda
  • /usr/lib/R/site-library/Biostrings/data/BLOSUM50.rda
  • /usr/lib/R/site-library/Biostrings/data/BLOSUM62.rda
  • /usr/lib/R/site-library/Biostrings/data/BLOSUM80.rda
  • /usr/lib/R/site-library/Biostrings/data/HNF4alpha.rda
  • /usr/lib/R/site-library/Biostrings/data/PAM120.rda
  • /usr/lib/R/site-library/Biostrings/data/PAM250.rda
  • /usr/lib/R/site-library/Biostrings/data/PAM30.rda
  • /usr/lib/R/site-library/Biostrings/data/PAM40.rda
  • /usr/lib/R/site-library/Biostrings/data/PAM70.rda
  • /usr/lib/R/site-library/Biostrings/data/yeastSEQCHR1.rda
  • /usr/lib/R/site-library/Biostrings/DESCRIPTION
  • /usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.pdf
  • /usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.R
  • /usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.Rnw
  • /usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.pdf
  • /usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.Rnw
  • /usr/lib/R/site-library/Biostrings/doc/index.html
  • /usr/lib/R/site-library/Biostrings/doc/matchprobes.R
  • /usr/lib/R/site-library/Biostrings/doc/matchprobes.Rmd
  • /usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.R
  • /usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.Rmd
  • /usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.pdf
  • /usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.Rnw
  • /usr/lib/R/site-library/Biostrings/extdata/dm3_upstream2000.fa.gz
  • /usr/lib/R/site-library/Biostrings/extdata/fastaEx.fa
  • /usr/lib/R/site-library/Biostrings/extdata/hg18chr8_gap.txt
  • /usr/lib/R/site-library/Biostrings/extdata/hg18chrY_gap.txt
  • /usr/lib/R/site-library/Biostrings/extdata/msx2_mRNA.aln
  • /usr/lib/R/site-library/Biostrings/extdata/Phylip.txt
  • /usr/lib/R/site-library/Biostrings/extdata/README
  • /usr/lib/R/site-library/Biostrings/extdata/s_1_sequence.txt
  • /usr/lib/R/site-library/Biostrings/extdata/Sc.fa
  • /usr/lib/R/site-library/Biostrings/extdata/someORF.fa
  • /usr/lib/R/site-library/Biostrings/extdata/someORF.fa.gz
  • /usr/lib/R/site-library/Biostrings/extdata/Sp.fa
  • /usr/lib/R/site-library/Biostrings/help/aliases.rds
  • /usr/lib/R/site-library/Biostrings/help/AnIndex
  • /usr/lib/R/site-library/Biostrings/help/Biostrings.rdb
  • /usr/lib/R/site-library/Biostrings/help/Biostrings.rdx
  • /usr/lib/R/site-library/Biostrings/help/paths.rds
  • /usr/lib/R/site-library/Biostrings/html/00Index.html
  • /usr/lib/R/site-library/Biostrings/html/R.css
  • /usr/lib/R/site-library/Biostrings/include/Biostrings_defines.h
  • /usr/lib/R/site-library/Biostrings/include/Biostrings_interface.h
  • /usr/lib/R/site-library/Biostrings/include/_Biostrings_stubs.c
  • /usr/lib/R/site-library/Biostrings/INDEX
  • /usr/lib/R/site-library/Biostrings/libs/Biostrings.so
  • /usr/lib/R/site-library/Biostrings/Meta/data.rds
  • /usr/lib/R/site-library/Biostrings/Meta/features.rds
  • /usr/lib/R/site-library/Biostrings/Meta/hsearch.rds
  • /usr/lib/R/site-library/Biostrings/Meta/links.rds
  • /usr/lib/R/site-library/Biostrings/Meta/nsInfo.rds
  • /usr/lib/R/site-library/Biostrings/Meta/package.rds
  • /usr/lib/R/site-library/Biostrings/Meta/Rd.rds
  • /usr/lib/R/site-library/Biostrings/Meta/vignette.rds
  • /usr/lib/R/site-library/Biostrings/NAMESPACE
  • /usr/lib/R/site-library/Biostrings/NEWS
  • /usr/lib/R/site-library/Biostrings/R/Biostrings
  • /usr/lib/R/site-library/Biostrings/R/Biostrings.rdb
  • /usr/lib/R/site-library/Biostrings/R/Biostrings.rdx
  • /usr/lib/R/site-library/Biostrings/unitTests/test_matchDNAPattern.R.FIXME
  • /usr/lib/R/site-library/Biostrings/unitTests/test_MultipleAlignment.R
  • /usr/lib/R/site-library/Biostrings/unitTests/test_seqinfo-methods.R
  • /usr/lib/R/site-library/Biostrings/unitTests/test_twoWayAlphabetFrequency.R
  • /usr/lib/R/site-library/Biostrings/unitTests/test_XString.R
  • /usr/share/doc/r-bioc-biostrings/changelog.Debian.gz
  • /usr/share/doc/r-bioc-biostrings/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testenImage mit r-bioc-biostrings bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
2.74.1+dfsg-2trixie / mainamd64Debian 13 · main · amd6413 MiB14 MiBpool/main/r/r-bioc-biostrings/r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb
2.74.1+dfsg-2trixie / mainarm64Debian 13 · main · arm6413 MiB14 MiBpool/main/r/r-bioc-biostrings/r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.74.1+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 179d57a03f3d176500363a07e67bd856ec6f9406af4f0b6978c85aa31278549f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '179d57a03f3d176500363a07e67bd856ec6f9406af4f0b6978c85aa31278549f' 'r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

2.74.1+dfsg-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: fe7ce3d896332273c147db0072f0c5510fbfa348a619cae7506d1ea81ac09c28

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'fe7ce3d896332273c147db0072f0c5510fbfa348a619cae7506d1ea81ac09c28' 'r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified

r-bioc-biostrings Package for Debian 13 (Trixie) | OpenFactory