Linux workstation

Debian 13 (Trixie) native package

ragout

Reference-Assisted Genome Ordering UTility

Packages / Debian 13 (Trixie) / science / ragout

[Source: ragout]

Package: ragout (2.3-5+b2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

Reference-Assisted Genome Ordering UTility

Other Packages Related to ragout:

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libstdc++6] (>= 14)

    GNU Standard C++ Library v3

  • dep: [python3] [any]

    interactive high-level object-oriented language (default python3 version)

  • dep: [python3-networkx]

    tool to create, manipulate and study complex networks (Python3)

  • dep: [python3-six]

    Python 2 and 3 compatibility library

  • rec: [sibelia]

    comparative genomics tool

Download ragout

ArchitecturePackage SizeInstalled SizeFiles
amd642.0 MiB9.4 MiB[list of files]
arm642.0 MiB9.4 MiB[list of files]

Paketdateipfade (61)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/ragout
  • /usr/bin/ragout-maf2synteny
  • /usr/bin/ragout-overlap
  • /usr/lib/python3/dist-packages/ragout-2.3.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/ragout-2.3.egg-info/entry_points.txt
  • /usr/lib/python3/dist-packages/ragout-2.3.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/ragout-2.3.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/ragout/assembly_graph/assembly_refine.py
  • /usr/lib/python3/dist-packages/ragout/assembly_graph/__init__.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/breakpoint_graph.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/chimera_detector.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/inferer.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/__init__.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/permutation.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/repeat_resolver.py
  • /usr/lib/python3/dist-packages/ragout/__init__.py
  • /usr/lib/python3/dist-packages/ragout/maf2synteny/__init__.py
  • /usr/lib/python3/dist-packages/ragout/maf2synteny/maf2synteny.py
  • /usr/lib/python3/dist-packages/ragout/main.py
  • /usr/lib/python3/dist-packages/ragout/newick/__init__.py
  • /usr/lib/python3/dist-packages/ragout/newick/lexer.py
  • /usr/lib/python3/dist-packages/ragout/newick/parser.py
  • /usr/lib/python3/dist-packages/ragout/newick/tokens.py
  • /usr/lib/python3/dist-packages/ragout/newick/tree.py
  • /usr/lib/python3/dist-packages/ragout/overlap/__init__.py
  • /usr/lib/python3/dist-packages/ragout/overlap/overlap.py
  • /usr/lib/python3/dist-packages/ragout/parsers/fasta_parser.py
  • /usr/lib/python3/dist-packages/ragout/parsers/__init__.py
  • /usr/lib/python3/dist-packages/ragout/parsers/phylogeny_parser.py
  • /usr/lib/python3/dist-packages/ragout/parsers/recipe_parser.py
  • /usr/lib/python3/dist-packages/ragout/phylogeny/inferer.py
  • /usr/lib/python3/dist-packages/ragout/phylogeny/__init__.py
  • /usr/lib/python3/dist-packages/ragout/phylogeny/phylogeny.py
  • /usr/lib/python3/dist-packages/ragout/scaffolder/__init__.py
  • /usr/lib/python3/dist-packages/ragout/scaffolder/merge_iters.py
  • /usr/lib/python3/dist-packages/ragout/scaffolder/output_generator.py
  • /usr/lib/python3/dist-packages/ragout/scaffolder/scaffolder.py
  • /usr/lib/python3/dist-packages/ragout/shared/config.py
  • /usr/lib/python3/dist-packages/ragout/shared/datatypes.py
  • /usr/lib/python3/dist-packages/ragout/shared/debug.py
  • /usr/lib/python3/dist-packages/ragout/shared/__init__.py
  • /usr/lib/python3/dist-packages/ragout/shared/utils.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/cactus.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/hal.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/__init__.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/maf.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/sibelia.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/synteny_backend.py
  • /usr/lib/python3/dist-packages/ragout/tests/data/DH1.fasta
  • /usr/lib/python3/dist-packages/ragout/tests/data/ecoli.rcp
  • /usr/lib/python3/dist-packages/ragout/tests/data/mg1655_contigs.fasta
  • /usr/lib/python3/dist-packages/ragout/tests/data/mg1655.coords
  • /usr/lib/python3/dist-packages/ragout/tests/__init__.py
  • /usr/lib/python3/dist-packages/ragout/tests/test_toy.py
  • /usr/lib/python3/dist-packages/ragout/__version__.py
  • /usr/share/doc/ragout/changelog.Debian.arm64.gz
  • /usr/share/doc/ragout/changelog.Debian.gz
  • /usr/share/doc/ragout/copyright
  • /usr/share/man/man1/ragout.1.gz
  • /usr/share/man/man1/ragout-maf2synteny.1.gz
  • /usr/share/man/man1/ragout-overlap.1.gz

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testenImage mit ragout bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
2.3-5+b2trixie / mainarm64Debian 13 · main · arm642.0 MiB9.4 MiBpool/main/r/ragout/ragout_2.3-5+b2_arm64.deb
2.3-5trixie / mainamd64Debian 13 · main · amd642.0 MiB9.4 MiBpool/main/r/ragout/ragout_2.3-5_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.3-5+b2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: ccf9ac692e7d4767fef046a7250184ba89a24e5bcc56ca73420e015dba97235d

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'ccf9ac692e7d4767fef046a7250184ba89a24e5bcc56ca73420e015dba97235d' 'ragout_2.3-5+b2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

2.3-5 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 617e5a16b2fefc5cc4cc319a056e0ba57ea893aafa5e272e0f8d57e520e294ec

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '617e5a16b2fefc5cc4cc319a056e0ba57ea893aafa5e272e0f8d57e520e294ec' 'ragout_2.3-5_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified

ragout Package for Debian 13 (Trixie) | OpenFactory