Debian 13 (Trixie) native package

seer

genomic sequence element (kmer) enrichment analysis

Packages / Debian 13 (Trixie) / science / seer

[Source: seer]

Package: seer (1.1.4-8+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

genomic sequence element (kmer) enrichment analysis

Other Packages Related to seer:

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streamlined C++ linear algebra library
dep: [libblas3]
Basic Linear Algebra Reference implementations, shared library
dep: libblas.so.3
Package not available
dep: [libboost-program-options1.83.0] (>= 1.83.0)
program options library for C++
dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libgzstream0] (>= 1.5+dfsg)
provide functionality of zlib C-library in a C++ iostream
dep: [libhdf5-310] (>= 1.14.3)
HDF5 C runtime files - serial version
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [libtext-csv-perl]
comma-separated values manipulator (using XS or PurePerl)

sug: [fsm-lite]
frequency-based string mining (lite)

Download seer

Architecture	Package Size	Installed Size	Files
amd64	1.2 MiB	4.9 MiB	[list of files]
arm64	1.1 MiB	4.9 MiB	[list of files]

Paketdateipfade (64)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/blastn_to_phandango
/usr/bin/blast_top_hits
/usr/bin/combineKmers
/usr/bin/filter_seer
/usr/bin/hits_to_fastq
/usr/bin/kmds
/usr/bin/map_back
/usr/bin/mapping_to_phandango
/usr/bin/mash2matrix
/usr/bin/reformat_output
/usr/bin/R_mds
/usr/bin/seer
/usr/share/doc/seer/changelog.Debian.amd64.gz
/usr/share/doc/seer/changelog.Debian.arm64.gz
/usr/share/doc/seer/changelog.Debian.gz
/usr/share/doc/seer/copyright
/usr/share/doc/seer/examples/6259_5_16.fa
/usr/share/doc/seer/examples/all_structure_new
/usr/share/doc/seer/examples/all_structure_new.samples
/usr/share/doc/seer/examples/assembly_locations.txt
/usr/share/doc/seer/examples/covariates.txt
/usr/share/doc/seer/examples/example_kmers.gz
/usr/share/doc/seer/examples/example.pheno
/usr/share/doc/seer/examples/example_wrapper.py
/usr/share/doc/seer/examples/filter_in.txt
/usr/share/doc/seer/examples/generate_test.pl
/usr/share/doc/seer/examples/Makefile
/usr/share/doc/seer/examples/map_in.txt
/usr/share/doc/seer/examples/run_test.pl
/usr/share/doc/seer/examples/subset.cont.pheno
/usr/share/doc/seer/examples/subset.pheno
/usr/share/doc/seer/examples/test1.e.txt
/usr/share/doc/seer/examples/test1.o.txt
/usr/share/doc/seer/examples/test2.e.txt
/usr/share/doc/seer/examples/test2.o.txt
/usr/share/doc/seer/examples/test3.e.txt
/usr/share/doc/seer/examples/test3.o.txt
/usr/share/doc/seer/examples/test4.e.txt
/usr/share/doc/seer/examples/test4.o.txt
/usr/share/doc/seer/examples/test5.e.txt
/usr/share/doc/seer/examples/test5.o.txt
/usr/share/doc/seer/examples/test6.e.txt
/usr/share/doc/seer/examples/test6.o.txt
/usr/share/doc/seer/examples/test7.e.txt
/usr/share/doc/seer/examples/test7.o.txt
/usr/share/doc/seer/examples/test8.e.txt
/usr/share/doc/seer/examples/test8.o.txt
/usr/share/doc/seer/examples/tests_passed
/usr/share/doc/seer/README.Debian
/usr/share/doc/seer/README.source
/usr/share/doc/seer/README.test
/usr/share/doc/seer/run-unit-test
/usr/share/man/man1/blastn_to_phandango.1.gz
/usr/share/man/man1/blast_top_hits.1.gz
/usr/share/man/man1/combineKmers.1.gz
/usr/share/man/man1/filter_seer.1.gz
/usr/share/man/man1/hits_to_fastq.1.gz
/usr/share/man/man1/kmds.1.gz
/usr/share/man/man1/map_back.1.gz
/usr/share/man/man1/mapping_to_phandango.1.gz
/usr/share/man/man1/mash2matrix.1.gz
/usr/share/man/man1/reformat_output.1.gz
/usr/share/man/man1/R_mds.1.gz
/usr/share/man/man1/seer.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testen Image mit seer bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.1.4-8+b1	trixie / main	amd64	Debian 13 · main · amd64	1.2 MiB	4.9 MiB	pool/main/s/seer/seer_1.1.4-8+b1_amd64.deb
1.1.4-8+b1	trixie / main	arm64	Debian 13 · main · arm64	1.1 MiB	4.9 MiB	pool/main/s/seer/seer_1.1.4-8+b1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.1.4-8+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 10c5dfe1fdc050497c41f37a9c85c928c7d38618178c9f7eb0cdd4c82202b6cf

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '10c5dfe1fdc050497c41f37a9c85c928c7d38618178c9f7eb0cdd4c82202b6cf' 'seer_1.1.4-8+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.1.4-8+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: f923245dcede2e76a42ede46eee11603dde65ced4d2a418f44e3a2bfa2e51ca1

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'f923245dcede2e76a42ede46eee11603dde65ced4d2a418f44e3a2bfa2e51ca1' 'seer_1.1.4-8+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified