Debian 13 (Trixie) native package

sra-toolkit

utilities for the NCBI Sequence Read Archive

Packages / Debian 13 (Trixie) / science / sra-toolkit

[Source: sra-sdk]

Package: sra-toolkit

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

[libncbi-ngs3]
Next Generation Sequencing language Bindings (full runtime)
[libncbi-ngs-dev]
Next Generation Sequencing language Bindings (C++ development)
[libngs-c++3]
Next Generation Sequencing language Bindings (C++ runtime)
[libngs-c++-dev]
Next Generation Sequencing language Bindings (C++ development)
[libngs-java]
Next Generation Sequencing language Bindings (Java bindings)
[libngs-java-doc]
Next Generation Sequencing language Bindings (Java documentation)
[libngs-jni]
Next Generation Sequencing language Bindings (Java native binding)
[python3-ngs]
Next Generation Sequencing language Bindings (Python3 bindings)

utilities for the NCBI Sequence Read Archive

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Paketdateipfade (98)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/etc/ncbi/certs.kfg
/etc/ncbi/default.kfg
/etc/ncbi/vdb-copy.kfg
/usr/bin/abi-dump
/usr/bin/abi-load
/usr/bin/align-cache
/usr/bin/align-info
/usr/bin/bam-load
/usr/bin/cache-mgr
/usr/bin/ccextract
/usr/bin/cg-load
/usr/bin/check-corrupt
/usr/bin/check-redact
/usr/bin/compute-coverage
/usr/bin/compute-coverage-ngs
/usr/bin/copycat
/usr/bin/crc32sum
/usr/bin/dump-blob-boundaries
/usr/bin/dump-ref-fasta
/usr/bin/fastconv
/usr/bin/fasterq-dump
/usr/bin/fastq-dump
/usr/bin/fastq-load
/usr/bin/general-loader
/usr/bin/helicos-load
/usr/bin/illumina-dump
/usr/bin/illumina-load
/usr/bin/kar
/usr/bin/kar+
/usr/bin/kar+meta
/usr/bin/kdb-index
/usr/bin/kdbmeta
/usr/bin/latf-load
/usr/bin/make-read-filter
/usr/bin/md5cp
/usr/bin/meta-cmp
/usr/bin/meta-copy
/usr/bin/meta-repair
/usr/bin/ngs-pileup
/usr/bin/pacbio-correct
/usr/bin/pacbio-load
/usr/bin/pacbio-loadxml
/usr/bin/pileup-stats
/usr/bin/prefetch
/usr/bin/rcexplain
/usr/bin/read-filter-redact
/usr/bin/ref-variation
/usr/bin/rowwritetest
/usr/bin/sam-dump
/usr/bin/samview
/usr/bin/samview-util
/usr/bin/schema-replace
/usr/bin/sff-dump
/usr/bin/sff-load
/usr/bin/sharq
/usr/bin/sortreadtest
/usr/bin/sra-info
/usr/bin/srapath
/usr/bin/sra-pileup
/usr/bin/sra-search
/usr/bin/sra-sort
/usr/bin/sra-sort-cg
/usr/bin/sra-stat
/usr/bin/srf-load
/usr/bin/test-download
/usr/bin/testld
/usr/bin/test-read-write-cursor
/usr/bin/test-sra
/usr/bin/txt2kdb
/usr/bin/var-expand
/usr/bin/vdb-config
/usr/bin/vdb-copy
/usr/bin/vdb-decrypt
/usr/bin/vdb-diff
/usr/bin/vdb-dump
/usr/bin/vdb-encrypt
/usr/bin/vdb-lock
/usr/bin/vdb-sql
/usr/bin/vdb-unlock
/usr/bin/vdb-validate
/usr/lib/sra-toolkit/fasterq-dump-orig
/usr/lib/sra-toolkit/fastq-dump-orig
/usr/lib/sra-toolkit/prefetch-orig
/usr/lib/sra-toolkit/sam-dump-orig
/usr/lib/sra-toolkit/srapath-orig
/usr/lib/sra-toolkit/sra-pileup-orig
/usr/lib/sra-toolkit/sratools
/usr/lib/sra-toolkit/vdb-dump-orig
/usr/share/doc/sra-toolkit/changelog.Debian.gz
/usr/share/doc/sra-toolkit/changelog.gz
/usr/share/doc/sra-toolkit/copyright
/usr/share/doc/sra-toolkit/README-blastn
/usr/share/doc/sra-toolkit/README.Debian
/usr/share/doc/sra-toolkit/README.md.gz
/usr/share/doc/sra-toolkit/README.test
/usr/share/doc/sra-toolkit/README-vdb-config.gz
/usr/share/doc/sra-toolkit/run-unit-test
/usr/share/doc/sra-toolkit/test-data.tar.gz

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testen Image mit sra-toolkit bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified