Debian 13 (Trixie) native package

stacks

pipeline for building loci from short-read DNA sequences

Packages / Debian 13 (Trixie) / science / stacks

Package: stacks

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [creskolab.uoregon.edu]

pipeline for building loci from short-read DNA sequences

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Paketdateipfade (49)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/stacks
/usr/libexec/debian-med/bin/clone_filter
/usr/libexec/debian-med/bin/cstacks
/usr/libexec/debian-med/bin/denovo_map
/usr/libexec/debian-med/bin/denovo_map.pl
/usr/libexec/debian-med/bin/gstacks
/usr/libexec/debian-med/bin/kmer_filter
/usr/libexec/debian-med/bin/phasedstacks
/usr/libexec/debian-med/bin/populations
/usr/libexec/debian-med/bin/process_radtags
/usr/libexec/debian-med/bin/process_shortreads
/usr/libexec/debian-med/bin/ref_map
/usr/libexec/debian-med/bin/ref_map.pl
/usr/libexec/debian-med/bin/sstacks
/usr/libexec/debian-med/bin/stacks-count-reads-per-sample-per-locus
/usr/libexec/debian-med/bin/stacks-dist-extract
/usr/libexec/debian-med/bin/stacks-gdb
/usr/libexec/debian-med/bin/stacks-hist2d-loci-samples-coverage
/usr/libexec/debian-med/bin/stacks-integrate-alignments
/usr/libexec/debian-med/bin/stacks-private-alleles
/usr/libexec/debian-med/bin/stacks-samtools-tview
/usr/libexec/debian-med/bin/tsv2bam
/usr/libexec/debian-med/bin/ustacks
/usr/libexec/stacks/bin/clone_filter
/usr/libexec/stacks/bin/cstacks
/usr/libexec/stacks/bin/denovo_map
/usr/libexec/stacks/bin/denovo_map.pl
/usr/libexec/stacks/bin/gstacks
/usr/libexec/stacks/bin/kmer_filter
/usr/libexec/stacks/bin/phasedstacks
/usr/libexec/stacks/bin/populations
/usr/libexec/stacks/bin/process_radtags
/usr/libexec/stacks/bin/process_shortreads
/usr/libexec/stacks/bin/ref_map
/usr/libexec/stacks/bin/ref_map.pl
/usr/libexec/stacks/bin/sstacks
/usr/libexec/stacks/bin/stacks-count-reads-per-sample-per-locus
/usr/libexec/stacks/bin/stacks-dist-extract
/usr/libexec/stacks/bin/stacks-gdb
/usr/libexec/stacks/bin/stacks-hist2d-loci-samples-coverage
/usr/libexec/stacks/bin/stacks-integrate-alignments
/usr/libexec/stacks/bin/stacks-private-alleles
/usr/libexec/stacks/bin/stacks-samtools-tview
/usr/libexec/stacks/bin/tsv2bam
/usr/libexec/stacks/bin/ustacks
/usr/share/doc/stacks/changelog.Debian.gz
/usr/share/doc/stacks/changelog.gz
/usr/share/doc/stacks/copyright
/usr/share/doc/stacks/README.Debian

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testen Image mit stacks bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified