Debian 12 (Bookworm) native package

phyml

Phylogenetic estimation using Maximum Likelihood

Packages / Debian 12 (Bookworm) / science / phyml

Package: phyml (3:3.3.20220408-3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.atgc-montpellier.fr]

Phylogenetic estimation using Maximum Likelihood

Other Packages Related to phyml:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libopenmpi3] (>= 4.1.4)
high performance message passing library -- shared library
dep: [openmpi-bin]
high performance message passing library -- binaries

Download phyml

Architecture	Package Size	Installed Size	Files
amd64	1.1 MiB	4.3 MiB	[list of files]
arm64	1.0 MiB	4.0 MiB	[list of files]

Percorsi file del pacchetto (26)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/phyml
/usr/bin/phyml-mpi
/usr/lib/phyml/bin/phyml
/usr/lib/phyml/bin/phyml-mpi
/usr/share/doc-base/phyml.phyml
/usr/share/doc/phyml/changelog.Debian.gz
/usr/share/doc/phyml/copyright
/usr/share/doc/phyml/examples/example.nex
/usr/share/doc/phyml/examples/lg4x/lg4x.xml
/usr/share/doc/phyml/examples/lg4x/X1.mat
/usr/share/doc/phyml/examples/lg4x/X2.mat
/usr/share/doc/phyml/examples/lg4x/X3.mat
/usr/share/doc/phyml/examples/lg4x/X4.mat
/usr/share/doc/phyml/examples/nexus_example.nxs
/usr/share/doc/phyml/examples/nucleic
/usr/share/doc/phyml/examples/phyrex/flu.xml
/usr/share/doc/phyml/examples/phyrex/h1n1.nxs
/usr/share/doc/phyml/examples/phyrex/usa_coord.txt
/usr/share/doc/phyml/examples/phytime/dating_example.xml
/usr/share/doc/phyml/examples/phytime/seq.txt
/usr/share/doc/phyml/examples/proteic
/usr/share/doc/phyml/phyml_manual.pdf
/usr/share/doc/phyml/README.Debian
/usr/share/doc/phyml/run-unit-test
/usr/share/man/man1/phyml.1.gz
/usr/share/man/man1/phyml-mpi.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usa questo pacchetto

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3:3.3.20220408-3	bookworm / main	amd64	Debian 12 · main · amd64	1.1 MiB	4.3 MiB	pool/main/p/phyml/phyml_3.3.20220408-3_amd64.deb
3:3.3.20220408-3	bookworm / main	arm64	Debian 12 · main · arm64	1.0 MiB	4.0 MiB	pool/main/p/phyml/phyml_3.3.20220408-3_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3:3.3.20220408-3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 219c33f8814f714589718d2ac2b00f002674d193a3700f2e7cec75e54f7549d1

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '219c33f8814f714589718d2ac2b00f002674d193a3700f2e7cec75e54f7549d1' 'phyml_3.3.20220408-3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

3:3.3.20220408-3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 1ec32f479356201cd39fd16ade7bbb47e0fbd6065435e2e575996aab767fc00a

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '1ec32f479356201cd39fd16ade7bbb47e0fbd6065435e2e575996aab767fc00a' 'phyml_3.3.20220408-3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified