Debian 12 (Bookworm) native package

rsem

RNA-Seq by Expectation-Maximization

Packages / Debian 12 (Bookworm) / science / rsem

[Source: rsem]

Package: rsem (1.3.3+dfsg-2+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [deweylab.github.io]

RNA-Seq by Expectation-Maximization

Other Packages Related to rsem:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libhts3] (>= 1.10)
C library for high-throughput sequencing data formats
dep: [libstdc++6] (>= 11)
GNU Standard C++ Library v3
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [r-base-core]
GNU R core of statistical computation and graphics system
dep: [bowtie]
Ultrafast memory-efficient short read aligner
dep: [bowtie2]
ultrafast memory-efficient short read aligner
dep: [python3]
interactive high-level object-oriented language (default python3 version)

sug: [r-bioc-ebseq]
R package for RNA-Seq Differential Expression Analysis
sug: [hisat2]
graph-based alignment of short nucleotide reads to many genomes

Download rsem

Architecture	Package Size	Installed Size	Files
amd64	34 MiB	36 MiB	[list of files]
arm64	34 MiB	36 MiB	[list of files]

Percorsi file del pacchetto (50)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/convert-sam-for-rsem
/usr/bin/extract-transcript-to-gene-map-from-trinity
/usr/bin/rsem-bam2readdepth
/usr/bin/rsem-bam2wig
/usr/bin/rsem-build-read-index
/usr/bin/rsem-calculate-credibility-intervals
/usr/bin/rsem-calculate-expression
/usr/bin/rsem-control-fdr
/usr/bin/rsem-extract-reference-transcripts
/usr/bin/rsem-generate-data-matrix
/usr/bin/rsem-generate-ngvector
/usr/bin/rsem-gen-transcript-plots
/usr/bin/rsem-get-unique
/usr/bin/rsem-gff3-to-gtf
/usr/bin/rsem-parse-alignments
/usr/bin/rsem_perl_utils.pm
/usr/bin/rsem-plot-model
/usr/bin/rsem-plot-transcript-wiggles
/usr/bin/rsem-prepare-reference
/usr/bin/rsem-preref
/usr/bin/rsem-refseq-extract-primary-assembly
/usr/bin/rsem-run-em
/usr/bin/rsem-run-gibbs
/usr/bin/rsem-sam-validator
/usr/bin/rsem-scan-for-paired-end-reads
/usr/bin/rsem-simulate-reads
/usr/bin/rsem-synthesis-reference-transcripts
/usr/bin/rsem-tbam2gbam
/usr/share/doc/rsem/changelog.Debian.amd64.gz
/usr/share/doc/rsem/changelog.Debian.arm64.gz
/usr/share/doc/rsem/changelog.Debian.gz
/usr/share/doc/rsem/cnt_file_description.txt
/usr/share/doc/rsem/copyright
/usr/share/doc/rsem/examples/mouse_ref_building_from_transcripts.tar.gz
/usr/share/doc/rsem/model_file_description.txt.gz
/usr/share/doc/rsem/README.md.gz
/usr/share/doc/rsem/README.test
/usr/share/doc/rsem/run-unit-test
/usr/share/doc/rsem/WHAT_IS_NEW.gz
/usr/share/man/man1/convert-sam-for-rsem.1.gz
/usr/share/man/man1/rsem-bam2wig.1.gz
/usr/share/man/man1/rsem-calculate-expression.1.gz
/usr/share/man/man1/rsem-control-fdr.1.gz
/usr/share/man/man1/rsem-generate-ngvector.1.gz
/usr/share/man/man1/rsem-gff3-to-gtf.1.gz
/usr/share/man/man1/rsem-plot-transcript-wiggles.1.gz
/usr/share/man/man1/rsem-prepare-reference.1.gz
/usr/share/man/man1/rsem-run-ebseq.1.gz
/usr/share/man/man1/rsem-simulate-reads.1.gz
/usr/share/perl5/rsem_perl_utils.pm

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.3.3+dfsg-2+b1	bookworm / main	amd64	Debian 12 · main · amd64	34 MiB	36 MiB	pool/main/r/rsem/rsem_1.3.3+dfsg-2+b1_amd64.deb
1.3.3+dfsg-2+b1	bookworm / main	arm64	Debian 12 · main · arm64	34 MiB	36 MiB	pool/main/r/rsem/rsem_1.3.3+dfsg-2+b1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.3.3+dfsg-2+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: d01f6e0cec05917d672e6cd2adc44756388c5e02aa7f134fd93531f562b596e0

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'd01f6e0cec05917d672e6cd2adc44756388c5e02aa7f134fd93531f562b596e0' 'rsem_1.3.3+dfsg-2+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.3.3+dfsg-2+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 0391ead2946a9c6623c27d9ca6ca9773675313a2ee71a2db8153e7341094ce52

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '0391ead2946a9c6623c27d9ca6ca9773675313a2ee71a2db8153e7341094ce52' 'rsem_1.3.3+dfsg-2+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified