Debian 13 (Trixie) native package

augustus

gene prediction in eukaryotic genomes

Packages / Debian 13 (Trixie) / science / augustus

Package: augustus

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [bioinf.uni-greifswald.de]

gene prediction in eukaryotic genomes

Nessun record pubblicato corrisponde a questo filtro di suite e architettura.

Percorsi file del pacchetto (142)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/aln2wig
/usr/bin/augustus
/usr/bin/bam2hints
/usr/bin/bam2wig
/usr/bin/compileSpliceCands
/usr/bin/etraining
/usr/bin/fastBlockSearch
/usr/bin/filterBam
/usr/bin/getSeq
/usr/bin/homGeneMapping
/usr/bin/joingenes
/usr/bin/load2db
/usr/bin/load2sqlitedb
/usr/bin/pp_simScore
/usr/bin/prepareAlign
/usr/share/augustus/scripts/aa2nonred.pl
/usr/share/augustus/scripts/add_name_to_gff3.pl
/usr/share/augustus/scripts/augustify.py
/usr/share/augustus/scripts/augustus2browser.pl
/usr/share/augustus/scripts/augustus2gbrowse.pl
/usr/share/augustus/scripts/autoAug.pl
/usr/share/augustus/scripts/autoAugPred.pl
/usr/share/augustus/scripts/autoAugTrain.pl
/usr/share/augustus/scripts/bamToWig.py
/usr/share/augustus/scripts/bedgraph2wig.pl
/usr/share/augustus/scripts/blat2gbrowse.pl
/usr/share/augustus/scripts/blat2hints.pl
/usr/share/augustus/scripts/block2prfl.pl
/usr/share/augustus/scripts/cegma2gff.pl
/usr/share/augustus/scripts/checkParamArchive.pl
/usr/share/augustus/scripts/checkUTR
/usr/share/augustus/scripts/cleanDOSfasta.pl
/usr/share/augustus/scripts/clusterAndSplitGenes.pl
/usr/share/augustus/scripts/compare_masking.pl
/usr/share/augustus/scripts/computeFlankingRegion.pl
/usr/share/augustus/scripts/createAugustusJoblist.pl
/usr/share/augustus/scripts/del_from_prfl.pl
/usr/share/augustus/scripts/evalCGP.pl
/usr/share/augustus/scripts/eval_dualdecomp.pl
/usr/share/augustus/scripts/eval_multi_gtf.pl
/usr/share/augustus/scripts/exonerate2hints.pl
/usr/share/augustus/scripts/exoniphyDb2hints.pl
/usr/share/augustus/scripts/extractAnno.py
/usr/share/augustus/scripts/extractTranscriptEnds.pl
/usr/share/augustus/scripts/filterGenesIn_mRNAname.pl
/usr/share/augustus/scripts/filterGenesIn.pl
/usr/share/augustus/scripts/filterGenesOut_mRNAname.pl
/usr/share/augustus/scripts/filterGenes.pl
/usr/share/augustus/scripts/filterInFrameStopCodons.pl
/usr/share/augustus/scripts/filterMaf.pl
/usr/share/augustus/scripts/filter-ppx.pl
/usr/share/augustus/scripts/filterPSL.pl
/usr/share/augustus/scripts/filterShrimp.pl
/usr/share/augustus/scripts/filterSpliceHints.pl
/usr/share/augustus/scripts/findGffNamesInFasta.pl
/usr/share/augustus/scripts/findRepetitiveProtSeqs.py
/usr/share/augustus/scripts/fix_in_frame_stop_codon_genes.py
/usr/share/augustus/scripts/fix_joingenes_gtf.pl
/usr/share/augustus/scripts/gbrowse.conf
/usr/share/augustus/scripts/gbrowseold2gff3.pl
/usr/share/augustus/scripts/gbSmallDNA2gff.pl
/usr/share/augustus/scripts/getAnnoFastaFromJoingenes.py
/usr/share/augustus/scripts/getAnnoFasta.pl
/usr/share/augustus/scripts/getLinesMatching.pl
/usr/share/augustus/scripts/get_loci_from_gb.pl
/usr/share/augustus/scripts/gff2gbSmallDNA.pl
/usr/share/augustus/scripts/gff2ps_mycustom
/usr/share/augustus/scripts/gffGetmRNA.pl
/usr/share/augustus/scripts/gp2othergp.pl
/usr/share/augustus/scripts/gtf2aa.pl
/usr/share/augustus/scripts/gtf2bed.pl
/usr/share/augustus/scripts/gtf2gff.pl
/usr/share/augustus/scripts/gth2gtf.pl
/usr/share/augustus/scripts/hal2maf_split.pl
/usr/share/augustus/scripts/helpMod.pm
/usr/share/augustus/scripts/join_aug_pred.pl
/usr/share/augustus/scripts/join_mult_hints.pl
/usr/share/augustus/scripts/joinPeptides.pl
/usr/share/augustus/scripts/maf2conswig.pl
/usr/share/augustus/scripts/makeMatchLists.pl
/usr/share/augustus/scripts/makeUtrTrainingSet.pl
/usr/share/augustus/scripts/maskNregions.pl
/usr/share/augustus/scripts/merge_masking.pl
/usr/share/augustus/scripts/moveParameters.pl
/usr/share/augustus/scripts/msa2prfl.pl
/usr/share/augustus/scripts/new_species.pl
/usr/share/augustus/scripts/optimize_augustus.pl
/usr/share/augustus/scripts/opt_init_and_term_probs.pl
/usr/share/augustus/scripts/parseSim4Output.pl
/usr/share/augustus/scripts/partition_gtf2gb.pl
/usr/share/augustus/scripts/pasapolyA2hints.pl
/usr/share/augustus/scripts/peptides2alternatives.pl
/usr/share/augustus/scripts/peptides2hints.pl
/usr/share/augustus/scripts/phastconsDB2hints.pl
/usr/share/augustus/scripts/polyA2hints.pl
/usr/share/augustus/scripts/prints2prfl.pl
/usr/share/augustus/scripts/pslMap.pl
/usr/share/augustus/scripts/randomSplit.pl
/usr/share/augustus/scripts/README.autoAug
/usr/share/augustus/scripts/rename_species.pl
/usr/share/augustus/scripts/retroDB2hints.pl
/usr/share/augustus/scripts/rmRedundantHints.pl
/usr/share/augustus/scripts/runAllSim4.pl
/usr/share/augustus/scripts/samMap.pl
/usr/share/augustus/scripts/scipiogff2gff.pl
/usr/share/augustus/scripts/setStopCodonFreqs.pl
/usr/share/augustus/scripts/simpleFastaHeaders.pl
/usr/share/augustus/scripts/simplifyFastaHeaders.pl
/usr/share/augustus/scripts/SplicedAlignment.pm
/usr/share/augustus/scripts/splitMfasta.pl
/usr/share/augustus/scripts/split_wiggle.pl
/usr/share/augustus/scripts/stringtie2fa.py
/usr/share/augustus/scripts/summarizeACGTcontent.pl
/usr/share/augustus/scripts/transMap2hints.pl
/usr/share/augustus/scripts/uniquePeptides.pl
/usr/share/augustus/scripts/utrgff2gbrowse.pl
/usr/share/augustus/scripts/webserver-results.head
/usr/share/augustus/scripts/webserver-results.tail
/usr/share/augustus/scripts/weedMaf.pl
/usr/share/augustus/scripts/wig2hints.pl
/usr/share/augustus/scripts/wigchoose.pl
/usr/share/augustus/scripts/writeResultsPage.pl
/usr/share/augustus/scripts/yaml2gff.1.4.pl
/usr/share/doc/augustus/changelog.Debian.gz
/usr/share/doc/augustus/changelog.gz
/usr/share/doc/augustus/copyright
/usr/share/doc/augustus/HISTORY.TXT.gz
/usr/share/man/man1/aln2wig.1.gz
/usr/share/man/man1/augustus.1.gz
/usr/share/man/man1/bam2hints.1.gz
/usr/share/man/man1/bam2wig.1.gz
/usr/share/man/man1/compileSpliceCands.1.gz
/usr/share/man/man1/etraining.1.gz
/usr/share/man/man1/fastBlockSearch.1.gz
/usr/share/man/man1/filterBam.1.gz
/usr/share/man/man1/getSeq.1.gz
/usr/share/man/man1/homGeneMapping.1.gz
/usr/share/man/man1/joingenes.1.gz
/usr/share/man/man1/load2db.1.gz
/usr/share/man/man1/load2sqlitedb.1.gz
/usr/share/man/man1/pp_simScore.1.gz
/usr/share/man/man1/prepareAlign.1.gz

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Nessun record pubblicato corrisponde a questo filtro di suite e architettura.

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified