Debian 13 (Trixie) native package

bitseq

Bayesian Inference of Transcripts from Sequencing Data

Packages / Debian 13 (Trixie) / science / bitseq

[Source: bitseq]

Package: bitseq (0.7.5+dfsg-6)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Bayesian Inference of Transcripts from Sequencing Data

Other Packages Related to bitseq:

dep: [libc6] (>= 2.29)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libgomp1] (>= 6)
GCC OpenMP (GOMP) support library
dep: [libstdc++6] (>= 5.2)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.2.3.3)
compression library - runtime
dep: [python3]
interactive high-level object-oriented language (default python3 version)
dep: [python3-numpy]
Python library for numerical computations (Python 3)

sug: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats

Download bitseq

Architecture	Package Size	Installed Size	Files
amd64	337 KiB	1.9 MiB	[list of files]

Percorsi file del pacchetto (41)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/biocUpdate
/usr/bin/checkTR
/usr/bin/convertSamples
/usr/bin/estimateDE
/usr/bin/estimateExpression
/usr/bin/estimateHyperPar
/usr/bin/estimateVBExpression
/usr/bin/extractSamples
/usr/bin/extractTranscriptInfo
/usr/bin/getCounts
/usr/bin/getFoldChange
/usr/bin/getGeneExpression
/usr/bin/getPPLR
/usr/bin/getVariance
/usr/bin/getWithinGeneExpression
/usr/bin/parseAlignment
/usr/bin/transposeLargeFile
/usr/lib/debian-med/bin/biocUpdate.sh
/usr/lib/debian-med/bin/checkTR.py
/usr/lib/debian-med/bin/extractTranscriptInfo.py
/usr/lib/debian-med/bin/getCounts.py
/usr/lib/debian-med/bin/parseAlignment.py
/usr/share/doc/bitseq/changelog.Debian.arm64.gz
/usr/share/doc/bitseq/changelog.Debian.gz
/usr/share/doc/bitseq/copyright
/usr/share/doc/bitseq/README.Debian
/usr/share/man/man1/convertSamples.1.gz
/usr/share/man/man1/estimateDE.1.gz
/usr/share/man/man1/estimateExpression.1.gz
/usr/share/man/man1/estimateHyperPar.1.gz
/usr/share/man/man1/estimateVBExpression.1.gz
/usr/share/man/man1/extractSamples.1.gz
/usr/share/man/man1/extractTranscriptInfo.1.gz
/usr/share/man/man1/getCounts.1.gz
/usr/share/man/man1/getFoldChange.1.gz
/usr/share/man/man1/getGeneExpression.1.gz
/usr/share/man/man1/getPPLR.1.gz
/usr/share/man/man1/getVariance.1.gz
/usr/share/man/man1/getWithinGeneExpression.1.gz
/usr/share/man/man1/parseAlignment.1.gz
/usr/share/man/man1/transposeLargeFile.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.7.5+dfsg-6	trixie / main	amd64	Debian 13 · main · amd64	337 KiB	1.9 MiB	pool/main/b/bitseq/bitseq_0.7.5+dfsg-6_amd64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.7.5+dfsg-6 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 57e28a2d05930155fb59389831e6c93fdbaa0bb8bf6c419e4debed037cb162a9

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '57e28a2d05930155fb59389831e6c93fdbaa0bb8bf6c419e4debed037cb162a9' 'bitseq_0.7.5+dfsg-6_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified