Debian 13 (Trixie) native package

discosnp

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Packages / Debian 13 (Trixie) / science / discosnp

[Source: discosnp]

Package: discosnp

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [colibread.inria.fr]

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Nessun record pubblicato corrisponde a questo filtro di suite e architettura.

Percorsi file del pacchetto (121)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/create_coverage_h5_file
/usr/bin/kissnp2
/usr/bin/kissreads2
/usr/bin/run_discoSnp++_ML.sh
/usr/bin/run_discoSnp++.sh
/usr/lib/discosnp/bin/quick_hierarchical_clustering
/usr/lib/discosnp/bin/read_file_names
/usr/share/discosnp/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh
/usr/share/discosnp/discoSnpRAD/clustering_scripts/fasta_and_cluster_to_filtered_vcf.py
/usr/share/discosnp/discoSnpRAD/clustering_scripts/from_SRC_to_edges.py
/usr/share/discosnp/discoSnpRAD/clustering_scripts/README.md
/usr/share/discosnp/discoSnpRAD/COOKBOOK.md
/usr/share/discosnp/discoSnpRAD/post-processing_scripts/1SNP_per_cluster.py
/usr/share/discosnp/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py
/usr/share/discosnp/discoSnpRAD/post-processing_scripts/filter_by_cluster_size_and_rank.py
/usr/share/discosnp/discoSnpRAD/post-processing_scripts/filter_paralogs.py
/usr/share/discosnp/discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py
/usr/share/discosnp/discoSnpRAD/post-processing_scripts/README.md
/usr/share/discosnp/discoSnpRAD/post-processing_scripts/vcf2structure.sh
/usr/share/discosnp/discoSnpRAD/README.md
/usr/share/discosnp/discoSnpRAD/run_discoSnpRad.sh
/usr/share/discosnp/scripts/ClassVCF_creator.py
/usr/share/discosnp/scripts/clusters_and_fasta_to_fasta.py_DEPRECATED
/usr/share/discosnp/scripts/create_filtered_vcf.py
/usr/share/discosnp/scripts/create_IGV_compatible_VCF.sh
/usr/share/discosnp/scripts/discoSnp++_to_csv.py
/usr/share/discosnp/scripts/filterOnBestDP_multiple_variant_at_same_pos.py
/usr/share/discosnp/scripts/filter_out_using_MAF.py
/usr/share/discosnp/scripts/filter_out_using_ratio_of_covered_files.py
/usr/share/discosnp/scripts/format_phased_for_clustering.py
/usr/share/discosnp/scripts/format_phased_for_K2000.py
/usr/share/discosnp/scripts/format_phased_variants_for_haplotyping.py
/usr/share/discosnp/scripts/from_path_to_edges.py
/usr/share/discosnp/scripts/from_phased_alleles_to_clusters.sh
/usr/share/discosnp/scripts/functionObjectVCF_creator.py
/usr/share/discosnp/scripts/k3000/compute_pi.py
/usr/share/discosnp/scripts/k3000/extract_DP_from_vcf.py
/usr/share/discosnp/scripts/k3000/From phased facts to gfa graph.pdf
/usr/share/discosnp/scripts/k3000/K3000_common.py
/usr/share/discosnp/scripts/k3000/K3000_enhance_gfa.py
/usr/share/discosnp/scripts/k3000/K3000_fact_haplotypes_to_localized_variant_ids.py
/usr/share/discosnp/scripts/k3000/K3000_facts_to_fa.py
/usr/share/discosnp/scripts/k3000/K3000_facts_to_gfa.py
/usr/share/discosnp/scripts/k3000/K3000_filter_badly_overlapping_variants.py
/usr/share/discosnp/scripts/k3000/K3000_find_unitig_connected_pairs_of_facts.py
/usr/share/discosnp/scripts/k3000/K3000_gfa_post_treatment.py
/usr/share/discosnp/scripts/k3000/K3000_gfa_to_dat.py
/usr/share/discosnp/scripts/k3000/K3000_gfa_to_fa.py
/usr/share/discosnp/scripts/k3000/K3000_msr_to_gfa.py
/usr/share/discosnp/scripts/k3000/K3000_node_ids_to_node_sequences.py
/usr/share/discosnp/scripts/k3000/K3000_paths_to_fa.py
/usr/share/discosnp/scripts/k3000/K3000_phased_paths_to_fa.py
/usr/share/discosnp/scripts/k3000/K3000.py
/usr/share/discosnp/scripts/k3000/K3000_working_zone_no_redundant_edges.py
/usr/share/discosnp/scripts/k3000/K3000_working_zone.py
/usr/share/discosnp/scripts/k3000/negative_binomial.py
/usr/share/discosnp/scripts/k3000/run_K3000.sh
/usr/share/discosnp/scripts/k3000/Snakefile
/usr/share/discosnp/scripts/k3000/sorted_list.py
/usr/share/discosnp/scripts/k3000/stats.py
/usr/share/discosnp/scripts/keep_extensions_disco_file.py
/usr/share/discosnp/scripts/phasing/phased_variants_to_graph_deprecated.py
/usr/share/discosnp/scripts/redundancy_removal_discosnp.py
/usr/share/discosnp/scripts/remove_extensions_disco_file.py
/usr/share/discosnp/scripts/remove_non_biallelic.py
/usr/share/discosnp/scripts/remove_non_covered_genotypes.py
/usr/share/discosnp/scripts/run_VCF_creator.sh
/usr/share/discosnp/scripts/simulations/ill100v4.bad.qual
/usr/share/discosnp/scripts/simulations/ill100v4.good.qual
/usr/share/discosnp/scripts/simulations/multiple_samples_simulator.sh
/usr/share/discosnp/scripts/simulations/random_mut_fasta.py
/usr/share/discosnp/scripts/simulations/README.md
/usr/share/discosnp/scripts/simulations/targeted_mut_fasta_corrected.py
/usr/share/discosnp/scripts/split_multiple_snps.py
/usr/share/discosnp/scripts/validation_scripts/compare_vcf_disco_pos_allele_only.py
/usr/share/discosnp/scripts/validation_scripts/eval_disco_one_snp_per_locus.py
/usr/share/discosnp/scripts/VCF_creator.py
/usr/share/discosnp/scripts/vcf_formatting_functions.py
/usr/share/discosnp/scripts/zero2one.py
/usr/share/doc/discosnp/changelog.Debian.amd64.gz
/usr/share/doc/discosnp/changelog.Debian.arm64.gz
/usr/share/doc/discosnp/changelog.Debian.gz
/usr/share/doc/discosnp/changelog.gz
/usr/share/doc/discosnp/copyright
/usr/share/doc/discosnp/discoSnp_user_guide.odt
/usr/share/doc/discosnp/discoSnp_user_guide.pdf.gz
/usr/share/doc/discosnp/discoSnp_user_guide.txt.gz
/usr/share/doc/discosnp/README.Debian
/usr/share/doc/discosnp/README.md.gz
/usr/share/doc/discosnp/README.test
/usr/share/doc/discosnp/run-unit-test
/usr/share/doc/discosnp/test/fof.txt
/usr/share/doc/discosnp/test/large_test/fof_rad_indel.txt
/usr/share/doc/discosnp/test/large_test/fof_rad.txt
/usr/share/doc/discosnp/test/large_test/generate_refs.sh
/usr/share/doc/discosnp/test/large_test/large_test.sh
/usr/share/doc/discosnp/test/large_test/local_large_test.sh.gz
/usr/share/doc/discosnp/test/large_test/rad_option_test/fof_rad.txt_radtest_k_31_c_auto_D_0_P_4_b_2_removemeplease
/usr/share/doc/discosnp/test/large_test/rad_option_test/loci_reads.gz
/usr/share/doc/discosnp/test/large_test/rad_option_test/loci_reads_one_indel.gz
/usr/share/doc/discosnp/test/large_test/rad_option_test/radref_k_31_c_auto_D_0_P_4_b_2_coherent.fa
/usr/share/doc/discosnp/test/reads_sequence1.fasta.gz
/usr/share/doc/discosnp/test/reads_sequence2.fasta.gz
/usr/share/doc/discosnp/test/ref_discoRes_k_31_c_3_D_100_P_1_b_0_coherent.fa.gz
/usr/share/doc/discosnp/test/ref_discoRes_k_31_c_3_D_100_P_1_b_0_coherent.vcf
/usr/share/doc/discosnp/test/ref_discoRes_k_31_c_3_D_100_P_3_b_0_coherent.fa.gz
/usr/share/doc/discosnp/test/ref_discoRes_k_31_c_3_D_100_P_3_b_0_coherent.vcf
/usr/share/doc/discosnp/test/ref_discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.fa.gz
/usr/share/doc/discosnp/test/ref_discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.vcf
/usr/share/doc/discosnp/test/reference_genome.fa
/usr/share/doc/discosnp/test/ref_version.txt
/usr/share/doc/discosnp/test/simple_test.sh
/usr/share/doc/discosnp/vcf_creator_user_guide.odt
/usr/share/doc/discosnp/vcf_creator_user_guide.pdf.gz
/usr/share/doc/discosnp/vcf_creator_user_guide.txt.gz
/usr/share/lintian/overrides/discosnp
/usr/share/man/man1/kissnp2.1.gz
/usr/share/man/man1/kissreads2.1.gz
/usr/share/man/man1/run_discoSnpRad.sh.1.gz
/usr/share/man/man1/run_discoSnp++.sh.1.gz
/usr/share/python3/runtime.d/discosnp.rtupdate

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Versioni, suite e repository

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Nessun record pubblicato corrisponde a questo filtro di suite e architettura.

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified