Debian 13 (Trixie) native package

plasmidid

mapping-based, assembly-assisted plasmid identification tool

Packages / Debian 13 (Trixie) / science / plasmidid

Package: plasmidid (1.6.5+dfsg-2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

mapping-based, assembly-assisted plasmid identification tool

Other Packages Related to plasmidid:

dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [ncbi-blast+]
next generation suite of BLAST sequence search tools
dep: [bedtools]
suite of utilities for comparing genomic features
dep: [bowtie2]
ultrafast memory-efficient short read aligner
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats
dep: [prokka]
rapid annotation of prokaryotic genomes
dep: [cd-hit]
suite of programs designed to quickly group sequences
dep: [mash]
fast genome and metagenome distance estimation using MinHash
dep: [circos]
plotter for visualizing data

rec: [trimmomatic]
flexible read trimming tool for Illumina NGS data
rec: [spades]
genome assembler for single-cell and isolates data sets
rec: [python3-biopython]
Python3 library for bioinformatics
rec: [python3-numpy]
Python library for numerical computations (Python 3)
rec: [python3-pandas]
data structures for "relational" or "labeled" data

Download plasmidid

Architecture	Package Size	Installed Size	Files
amd64	46 KiB	331 KiB	[list of files]
arm64	46 KiB	331 KiB	[list of files]

Percorsi file del pacchetto (42)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/etc/plasmidid/annotation_config_file.txt
/etc/plasmidid/circos_individual_1_3_0.conf
/etc/plasmidid/circos_individual_1_3_3.conf
/etc/plasmidid/circos_summary_1_3_0.conf
/etc/plasmidid/circos_summary_1_3_3.conf
/etc/plasmidid/OR.conf
/etc/plasmidid/simple.conf
/usr/bin/plasmidID
/usr/share/doc/plasmidid/changelog.Debian.gz
/usr/share/doc/plasmidid/changelog.gz
/usr/share/doc/plasmidid/copyright
/usr/share/man/man1/plasmidID.1.gz
/usr/share/plasmidid/bin/adapt_filter_coverage.sh
/usr/share/plasmidid/bin/blast_align.sh
/usr/share/plasmidid/bin/blast_to_bed.sh
/usr/share/plasmidid/bin/blast_to_complete.sh
/usr/share/plasmidid/bin/blast_to_link.sh
/usr/share/plasmidid/bin/bowtie_mapper.sh
/usr/share/plasmidid/bin/build_karyotype.sh
/usr/share/plasmidid/bin/calculate_seqlen.sh
/usr/share/plasmidid/bin/cdhit_cluster.sh
/usr/share/plasmidid/bin/check_dependencies.sh
/usr/share/plasmidid/bin/check_mandatory_files.sh
/usr/share/plasmidid/bin/coordinate_adapter.sh
/usr/share/plasmidid/bin/download_plasmid_database.py
/usr/share/plasmidid/bin/draw_circos_images.sh
/usr/share/plasmidid/bin/filter_fasta.sh
/usr/share/plasmidid/bin/get_coverage.sh
/usr/share/plasmidid/bin/gff_to_bed.sh
/usr/share/plasmidid/bin/mashclust.py
/usr/share/plasmidid/bin/mash_screener.sh
/usr/share/plasmidid/bin/ncbi_database_fetcher.sh
/usr/share/plasmidid/bin/process_cluster_output.sh
/usr/share/plasmidid/bin/prokka_annotation.sh
/usr/share/plasmidid/bin/quality_trim.sh
/usr/share/plasmidid/bin/rename_from_fasta.sh
/usr/share/plasmidid/bin/sam_to_bam.sh
/usr/share/plasmidid/bin/spades_assembly.sh
/usr/share/plasmidid/bin/summary_report_pid.py
/usr/share/plasmidid/bin/summary_table.sh
/usr/share/plasmidid/plasmidID
/usr/share/python3/runtime.d/plasmidid.rtupdate

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.6.5+dfsg-2	trixie / main	amd64	Debian 13 · main · amd64	46 KiB	331 KiB	pool/main/p/plasmidid/plasmidid_1.6.5+dfsg-2_amd64.deb
1.6.5+dfsg-2	trixie / main	arm64	Debian 13 · main · arm64	46 KiB	331 KiB	pool/main/p/plasmidid/plasmidid_1.6.5+dfsg-2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.6.5+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e0ec3f8d2467bd4f685d0c2c32b08c57c3cf170714b522094b657a1f11f9336f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'e0ec3f8d2467bd4f685d0c2c32b08c57c3cf170714b522094b657a1f11f9336f' 'plasmidid_1.6.5+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.6.5+dfsg-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 691884337d6900379038e7543cb31694c0970fe58691dadca0bd858b01c7df94

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '691884337d6900379038e7543cb31694c0970fe58691dadca0bd858b01c7df94' 'plasmidid_1.6.5+dfsg-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified