Debian 13 (Trixie) native package

prime-phylo

bayesian estimation of gene trees taking the species tree into account

Packages / Debian 13 (Trixie) / science / prime-phylo

[Source: prime-phylo]

Package: prime-phylo (1.0.11-13+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [prime.sbc.su.se]

bayesian estimation of gene trees taking the species tree into account

Other Packages Related to prime-phylo:

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Larry Wall's Practical Extraction and Report Language
dep: [libblas3]
Basic Linear Algebra Reference implementations, shared library
dep: libblas.so.3
Package not available
dep: [libboost-mpi1.83.0] (>= 1.83.0)
C++ interface to the Message Passing Interface (MPI)
dep: [libboost-serialization1.83.0] (>= 1.83.0)
serialization library for C++
dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [liblapack3]
Library of linear algebra routines 3 - shared version
dep: liblapack.so.3
Package not available
dep: [libopenmpi40] (>= 5.0.6)
high performance message passing library -- shared library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [libxml2] (>= 2.7.4)
GNOME XML library

sug: [njplot]
phylogenetic tree drawing program
sug: [treeviewx]
Displays and prints phylogenetic trees
sug: [muscle]
Multiple alignment program of protein sequences
sug: [probalign]
multiple sequence alignment using partition function posterior probabilities
sug: [mafft]
Multiple alignment program for amino acid or nucleotide sequences
sug: [python3-biopython]
Python3 library for bioinformatics
sug: [mrbayes]
Bayesian Inference of Phylogeny
sug: [phyml]
Phylogenetic estimation using Maximum Likelihood
sug: [raxml]
Randomized Axelerated Maximum Likelihood of phylogenetic trees

Download prime-phylo

Architecture	Package Size	Installed Size	Files
amd64	825 KiB	3.1 MiB	[list of files]
arm64	728 KiB	3.2 MiB	[list of files]

Percorsi file del pacchetto (37)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/chainsaw
/usr/bin/mcmc_analysis
/usr/bin/primeDLRS
/usr/bin/primeDTLSR
/usr/bin/primeGEM
/usr/bin/primeGSRf
/usr/bin/reconcile
/usr/bin/reroot
/usr/bin/showtree
/usr/bin/tree2leafnames
/usr/bin/treesize
/usr/lib/prime-phylo/libprime-phylo-sfile.so
/usr/lib/prime-phylo/libprime-phylo.so
/usr/share/doc/prime-phylo/changelog.Debian.amd64.gz
/usr/share/doc/prime-phylo/changelog.Debian.arm64.gz
/usr/share/doc/prime-phylo/changelog.Debian.gz
/usr/share/doc/prime-phylo/changelog.gz
/usr/share/doc/prime-phylo/copyright
/usr/share/doc/prime-phylo/examples/gse
/usr/share/doc/prime-phylo/examples/hostfile
/usr/share/doc/prime-phylo/examples/seqfile
/usr/share/doc/prime-phylo/examples/treefile
/usr/share/doc/prime-phylo/README
/usr/share/doc/prime-phylo/README.test
/usr/share/doc/prime-phylo/run-unit-test
/usr/share/lintian/overrides/prime-phylo
/usr/share/man/man1/chainsaw.1.gz
/usr/share/man/man1/mcmc_analysis.1.gz
/usr/share/man/man1/primeDLRS.1.gz
/usr/share/man/man1/primeDTLSR.1.gz
/usr/share/man/man1/primeGEM.1.gz
/usr/share/man/man1/primeGSRf.1.gz
/usr/share/man/man1/reconcile.1.gz
/usr/share/man/man1/reroot.1.gz
/usr/share/man/man1/showtree.1.gz
/usr/share/man/man1/tree2leafnames.1.gz
/usr/share/man/man1/treesize.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.0.11-13+b1	trixie / main	amd64	Debian 13 · main · amd64	825 KiB	3.1 MiB	pool/main/p/prime-phylo/prime-phylo_1.0.11-13+b1_amd64.deb
1.0.11-13+b1	trixie / main	arm64	Debian 13 · main · arm64	728 KiB	3.2 MiB	pool/main/p/prime-phylo/prime-phylo_1.0.11-13+b1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.0.11-13+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3455beaad1ca0539664cda934ffd9d6880b87a66085101bc54b74748179959b0

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '3455beaad1ca0539664cda934ffd9d6880b87a66085101bc54b74748179959b0' 'prime-phylo_1.0.11-13+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.0.11-13+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: da3dde99103ada39bd6221997472813ecce80aa2f46225a20d0de046f34a5248

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'da3dde99103ada39bd6221997472813ecce80aa2f46225a20d0de046f34a5248' 'prime-phylo_1.0.11-13+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified