Debian 13 (Trixie) native package

proteinortho

Detection of (Co-)orthologs in large-scale protein analysis

Packages / Debian 13 (Trixie) / science / proteinortho

[Source: proteinortho]

Package: proteinortho (6.3.1+dfsg-1+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [gitlab.com]

Detection of (Co-)orthologs in large-scale protein analysis

Other Packages Related to proteinortho:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libgomp1] (>= 4.9)
GCC OpenMP (GOMP) support library
dep: [liblapack3]
Library of linear algebra routines 3 - shared version
dep: [libstdc++6] (>= 13.1)
GNU Standard C++ Library v3
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [python3]
interactive high-level object-oriented language (default python3 version)
dep: [ncbi-blast+]
next generation suite of BLAST sequence search tools
dep: [diamond-aligner] (>= 2.0.10~)
accelerated BLAST compatible local sequence aligner
dep: [procps]
/proc file system utilities

Download proteinortho

Architecture	Package Size	Installed Size	Files
amd64	342 KiB	1.1 MiB	[list of files]
arm64	321 KiB	1.2 MiB	[list of files]

Percorsi file del pacchetto (37)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/proteinortho
/usr/bin/proteinortho2html.pl
/usr/bin/proteinortho2tree.pl
/usr/bin/proteinortho2xml.pl
/usr/bin/proteinortho6.pl
/usr/bin/proteinortho_cleanupblastgraph
/usr/bin/proteinortho_clustering
/usr/bin/proteinortho_compareProteinorthoGraphs.pl
/usr/bin/proteinortho_do_mcl.pl
/usr/bin/proteinortho_extract_from_graph.pl
/usr/bin/proteinortho_ffadj_mcs.py
/usr/bin/proteinortho_formatUsearch.pl
/usr/bin/proteinortho_grab_proteins.pl
/usr/bin/proteinortho_graphMinusRemovegraph
/usr/bin/proteinortho_history.pl
/usr/bin/proteinortho_singletons.pl
/usr/bin/proteinortho_summary.pl
/usr/share/doc/proteinortho/changelog.Debian.arm64.gz
/usr/share/doc/proteinortho/changelog.Debian.gz
/usr/share/doc/proteinortho/changelog.gz
/usr/share/doc/proteinortho/copyright
/usr/share/doc/proteinortho/examples/C2.faa
/usr/share/doc/proteinortho/examples/C2.gff
/usr/share/doc/proteinortho/examples/C.faa
/usr/share/doc/proteinortho/examples/C.gff
/usr/share/doc/proteinortho/examples/chk_test.pl
/usr/share/doc/proteinortho/examples/E.faa
/usr/share/doc/proteinortho/examples/E.gff
/usr/share/doc/proteinortho/examples/L.faa
/usr/share/doc/proteinortho/examples/L.gff
/usr/share/doc/proteinortho/examples/M.faa
/usr/share/doc/proteinortho/examples/M.gff
/usr/share/doc/proteinortho/README.test
/usr/share/doc/proteinortho/run-unit-test
/usr/share/lintian/overrides/proteinortho
/usr/share/man/man1/proteinortho.1.gz
/usr/share/man/man1/proteinortho6.1.gz

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
6.3.1+dfsg-1+b1	trixie / main	arm64	Debian 13 · main · arm64	321 KiB	1.2 MiB	pool/main/p/proteinortho/proteinortho_6.3.1+dfsg-1+b1_arm64.deb
6.3.1+dfsg-1	trixie / main	amd64	Debian 13 · main · amd64	342 KiB	1.1 MiB	pool/main/p/proteinortho/proteinortho_6.3.1+dfsg-1_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

6.3.1+dfsg-1+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 8f124355e60a88499e6205663816cd3e394f06730a979e434d495c422d87c2ea

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '8f124355e60a88499e6205663816cd3e394f06730a979e434d495c422d87c2ea' 'proteinortho_6.3.1+dfsg-1+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

6.3.1+dfsg-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 14304072f2b88e713074afe7ef9842831f54df0398db48fabb7118625e8aba0f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '14304072f2b88e713074afe7ef9842831f54df0398db48fabb7118625e8aba0f' 'proteinortho_6.3.1+dfsg-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified