Debian 13 (Trixie) native package

psortb

bacterial localization prediction tool

Packages / Debian 13 (Trixie) / science / psortb

[Source: psortb]

Package: psortb (3.0.6+dfsg-4+b2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.psort.org]

bacterial localization prediction tool

Other Packages Related to psortb:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libmodhmm0] (>= 1.0+dfsg)
library for constructing, training and scoring hidden Markov models
dep: [libsquid1t64] (>= 1.9g+cvs20050121)
biosquid dynamic library for biological sequence analysis
dep: [libstdc++6] (>= 13.1)
GNU Standard C++ Library v3
dep: [libsvmloc0] (>= 1.0+dfsg)
PSORTb adapted library for svm machine-learning library
dep: [perl] (>= 5.40.0-8)
Larry Wall's Practical Extraction and Report Language
dep: perlapi-5.40.0
Package not available
dep: [libbio-perl-perl]
BioPerl core perl modules
dep: [libbio-perl-run-perl]
BioPerl wrappers: modules
dep: [libalgorithm-svm-perl]
bindings for the libsvm Support Vector Machine library
dep: [pftools]
build and search protein and DNA generalized profiles
dep: [librpc-xml-perl]
Perl implementation of the XML-RPC protocol

Download psortb

Architecture	Package Size	Installed Size	Files
amd64	16 MiB	114 MiB	[list of files]

Percorsi file del pacchetto (166)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/psort
/usr/lib/psort/conf/analysis/modhmm/amino_multi.pri
/usr/lib/psort/conf/analysis/modhmm/replacement_letter_multi.rpl
/usr/lib/psort/conf/analysis/modhmm/S_TMHMM_0.92b.hmg
/usr/lib/psort/conf/analysis/motif/archaea/changes
/usr/lib/psort/conf/analysis/motif/archaea/motifs.txt
/usr/lib/psort/conf/analysis/motif/archaea/notes.txt
/usr/lib/psort/conf/analysis/motif/gramneg/motifs.txt
/usr/lib/psort/conf/analysis/motif/grampos/motifs.txt
/usr/lib/psort/conf/analysis/omp-motif/omp-motifs.txt
/usr/lib/psort/conf/analysis/profile/archaea/notes.txt
/usr/lib/psort/conf/analysis/profile/archaea/profile_ids
/usr/lib/psort/conf/analysis/profile/archaea/ps_ALL
/usr/lib/psort/conf/analysis/profile/gramneg/profile_ids
/usr/lib/psort/conf/analysis/profile/gramneg/ps_ALL
/usr/lib/psort/conf/analysis/profile/grampos/profile_ids
/usr/lib/psort/conf/analysis/profile/grampos/ps_ALL
/usr/lib/psort/conf/analysis/sclblast/archaea/notes
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast.pos
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast.pot
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast.ptf
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast.pto
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast+swissprot+some_manual
/usr/lib/psort/conf/analysis/sclblast/gramneg/sclblast
/usr/lib/psort/conf/analysis/sclblast/gramneg/sclblast.pos
/usr/lib/psort/conf/analysis/sclblast/gramneg/sclblast.pot
/usr/lib/psort/conf/analysis/sclblast/gramneg/sclblast.ptf
/usr/lib/psort/conf/analysis/sclblast/gramneg/sclblast.pto
/usr/lib/psort/conf/analysis/sclblast/grampos/sclblast
/usr/lib/psort/conf/analysis/sclblast/grampos/sclblast.pos
/usr/lib/psort/conf/analysis/sclblast/grampos/sclblast.pot
/usr/lib/psort/conf/analysis/sclblast/grampos/sclblast.ptf
/usr/lib/psort/conf/analysis/sclblast/grampos/sclblast.pto
/usr/lib/psort/conf/analysis/sclblast/makedb.sh
/usr/lib/psort/conf/analysis/signal/archaea/check-sig
/usr/lib/psort/conf/analysis/signal/archaea/model.hmm
/usr/lib/psort/conf/analysis/signal/archaea/model.svm
/usr/lib/psort/conf/analysis/signal/archaea/notes
/usr/lib/psort/conf/analysis/signal/gramneg/check-sig
/usr/lib/psort/conf/analysis/signal/gramneg/model.hmm
/usr/lib/psort/conf/analysis/signal/gramneg/model.svm
/usr/lib/psort/conf/analysis/signal/grampos/check-sig
/usr/lib/psort/conf/analysis/signal/grampos/model.hmm
/usr/lib/psort/conf/analysis/signal/grampos/model.svm
/usr/lib/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Cellwall/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Cytoplasmic/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Extracellular/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Membrane/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/archaea/notes.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Cytoplasmic/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Extracellular/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Innermembrane/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Outermembrane/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Periplasmic/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Cellwall/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Cytoplasmic/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Extracellular/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Membrane/SVM_MODEL.txt
/usr/lib/psort/conf/output/bayesian/archaea/bayes.model
/usr/lib/psort/conf/output/bayesian/gramneg/bayes.model
/usr/lib/psort/conf/output/bayesian/gramneg/bayes-rpc.model
/usr/lib/psort/conf/output/bayesian/grampos/bayes.model
/usr/lib/psort/conf/output/bayesian/grampos/bayes-rpc.model
/usr/lib/x86_64-linux-gnu/perl5/5.40/Algorithm/HMM/Hit/Domain.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Algorithm/HMM/Hit/Global.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Algorithm/HMM/Hit.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Algorithm/HMM.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Algorithm/HMM/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/Algorithm/HMM/autosplit.ix
/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/Algorithm/HMM/HMM.so
/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/Bio/Tools/PSort/ModHMM/autosplit.ix
/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/Bio/Tools/PSort/ModHMM/ModHMM.so
/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/Bio/Tools/PSort/SVMLoc/autosplit.ix
/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Motif/Match.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Motif/Pattern.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Motif.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Constants.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Install.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/ModHMM.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/AnalysisI.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/Bayesian.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/HMMTOP.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/InputI.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/ModuleI.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/ModHMM.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/Motif.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/Null.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/OMPMotif.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/OutputI.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/Profile.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/Rules.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/SCLBlast.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/Signal.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/SVMLocApache.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Module/SVMLoc.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Pathway.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Profile/Match.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Profile.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Report/Formatter/html.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Report/Formatter/long.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Report/Formatter/normal.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Report/Formatter.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Report/Formatter/terse.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/Report/Result.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/SVMLoc/DataSet.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/SVMLoc.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/PSort/XMLRPC/Client.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Run/HMMTOP/Helix.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Run/HMMTOP.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Run/HMMTOP/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Run/SCLBlast/Hit.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Run/SCLBlastLocal.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Run/SCLBlast.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Run/SCLBlast/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Signal.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/Signal/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/Tools/SVMLoc.pm
/usr/share/doc/psortb/changelog.Debian.amd64.gz
/usr/share/doc/psortb/changelog.Debian.gz
/usr/share/doc/psortb/changelog.gz
/usr/share/doc/psortb/copyright
/usr/share/lintian/overrides/psortb
/usr/share/man/man1/psort.1.gz
/usr/share/man/man3/Algorithm::HMM.3pm.gz
/usr/share/man/man3/Algorithm::HMM::Hit.3pm.gz
/usr/share/man/man3/Algorithm::HMM::Hit::Domain.3pm.gz
/usr/share/man/man3/Algorithm::HMM::Hit::Global.3pm.gz
/usr/share/man/man3/Algorithm::HMM::Report.3pm.gz
/usr/share/man/man3/Bio::Tools::Motif.3pm.gz
/usr/share/man/man3/Bio::Tools::Motif::Match.3pm.gz
/usr/share/man/man3/Bio::Tools::Motif::Pattern.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::ModHMM.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::AnalysisI.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::ModuleI.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::InputI.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::Motif.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::Null.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::OMPMotif.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::OutputI.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::Profile.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Pathway.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Profile.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Profile::Match.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::SVMLoc.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::SVMLoc::DataSet.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::HMMTOP.3pm.gz
/usr/share/man/man3/Bio::Tools::Signal.3pm.gz
/usr/share/man/man3/Bio::Tools::SVMLoc.3pm.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usa questo pacchetto

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Prova Debian 13 (Trixie) nel browser Crea un'immagine che include psortb

Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3.0.6+dfsg-4+b2	trixie / main	amd64	Debian 13 · main · amd64	16 MiB	114 MiB	pool/main/p/psortb/psortb_3.0.6+dfsg-4+b2_amd64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.0.6+dfsg-4+b2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 514a92fed70806b7bc400c04157aee4108c74e9c3f8d30fd2f5d47c42e0e228b

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '514a92fed70806b7bc400c04157aee4108c74e9c3f8d30fd2f5d47c42e0e228b' 'psortb_3.0.6+dfsg-4+b2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified