Debian 13 (Trixie) native package

python3-pybedtools

Python 3 wrapper around BEDTools for bioinformatics work

Packages / Debian 13 (Trixie) / python / python3-pybedtools

[Source: python-pybedtools]

Package: python3-pybedtools (0.10.0-4+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [daler.github.io]

Similar packages:

[pybedtools-bin]
Scripts produced for pybedtools
[python-pybedtools-doc]
Documentation for pybedtools library

Python 3 wrapper around BEDTools for bioinformatics work

Other Packages Related to python3-pybedtools:

dep: [python3] (<< 3.14)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.13~)
interactive high-level object-oriented language (default python3 version)
dep: [python3-numpy]
Python library for numerical computations (Python 3)
dep: [python3-pysam]
interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 13.1)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime

sug: [python-pybedtools-doc]
Documentation for pybedtools library

Download python3-pybedtools

Architecture	Package Size	Installed Size	Files
amd64	12 MiB	16 MiB	[list of files]
arm64	12 MiB	16 MiB	[list of files]

Percorsi file del pacchetto (130)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/python3/dist-packages/pybedtools-0.10.0.dist-info/INSTALLER
/usr/lib/python3/dist-packages/pybedtools-0.10.0.dist-info/METADATA
/usr/lib/python3/dist-packages/pybedtools-0.10.0.dist-info/top_level.txt
/usr/lib/python3/dist-packages/pybedtools-0.10.0.dist-info/WHEEL
/usr/lib/python3/dist-packages/pybedtools/bedtool.py
/usr/lib/python3/dist-packages/pybedtools/cbedtools.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pybedtools/cbedtools.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pybedtools/cbedtools.pxd
/usr/lib/python3/dist-packages/pybedtools/cbedtools.pyx
/usr/lib/python3/dist-packages/pybedtools/contrib/bigbed.py
/usr/lib/python3/dist-packages/pybedtools/contrib/bigwig.py
/usr/lib/python3/dist-packages/pybedtools/contrib/__init__.py
/usr/lib/python3/dist-packages/pybedtools/contrib/intersection_matrix.py
/usr/lib/python3/dist-packages/pybedtools/contrib/long_range_interaction.py
/usr/lib/python3/dist-packages/pybedtools/contrib/plotting.py
/usr/lib/python3/dist-packages/pybedtools/contrib/venn_maker.py
/usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pybedtools/featurefuncs.pyx
/usr/lib/python3/dist-packages/pybedtools/filenames.py
/usr/lib/python3/dist-packages/pybedtools/genome_registry.py
/usr/lib/python3/dist-packages/pybedtools/helpers.py
/usr/lib/python3/dist-packages/pybedtools/include/bedFile.cpp
/usr/lib/python3/dist-packages/pybedtools/include/bedFile.h
/usr/lib/python3/dist-packages/pybedtools/include/fileType.cpp
/usr/lib/python3/dist-packages/pybedtools/include/fileType.h
/usr/lib/python3/dist-packages/pybedtools/include/gzstream.cpp
/usr/lib/python3/dist-packages/pybedtools/include/gzstream.h
/usr/lib/python3/dist-packages/pybedtools/include/lineFileUtilities.h
/usr/lib/python3/dist-packages/pybedtools/__init__.py
/usr/lib/python3/dist-packages/pybedtools/logger.py
/usr/lib/python3/dist-packages/pybedtools/parallel.py
/usr/lib/python3/dist-packages/pybedtools/paths.py
/usr/lib/python3/dist-packages/pybedtools/settings.py
/usr/lib/python3/dist-packages/pybedtools/stats.py
/usr/lib/python3/dist-packages/pybedtools/test/data/1000genomes-example.vcf
/usr/lib/python3/dist-packages/pybedtools/test/data/164.gtf
/usr/lib/python3/dist-packages/pybedtools/test/data/a.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/a.igv_script
/usr/lib/python3/dist-packages/pybedtools/test/data/a.links.html
/usr/lib/python3/dist-packages/pybedtools/test/data/b.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/bedpe2.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/bedpe.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/c.gff
/usr/lib/python3/dist-packages/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/democonfig.yaml
/usr/lib/python3/dist-packages/pybedtools/test/data/d.gff
/usr/lib/python3/dist-packages/pybedtools/test/data/dm3-chr2L-5M.gff.gz
/usr/lib/python3/dist-packages/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz
/usr/lib/python3/dist-packages/pybedtools/test/data/example.narrowPeak
/usr/lib/python3/dist-packages/pybedtools/test/data/exons.gff
/usr/lib/python3/dist-packages/pybedtools/test/data/expand_test.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.1.100.bam
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.1.100.bam.bai
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.50.200.bam
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.50.200.bam.bai
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.bam
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.cram
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff.gz
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.othersort.bam
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.sorted.bam
/usr/lib/python3/dist-packages/pybedtools/test/data/gdc.sorted.bam.bai
/usr/lib/python3/dist-packages/pybedtools/test/data/genome.fa
/usr/lib/python3/dist-packages/pybedtools/test/data/hg19.gff
/usr/lib/python3/dist-packages/pybedtools/test/data/hg38-base.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/hg38-problem.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/__init__.py
/usr/lib/python3/dist-packages/pybedtools/test/data/issue_121.bam
/usr/lib/python3/dist-packages/pybedtools/test/data/issue319.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/issue319.out.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/issue319.vcf.gz
/usr/lib/python3/dist-packages/pybedtools/test/data/m1.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/mm9.bed12
/usr/lib/python3/dist-packages/pybedtools/test/data/multibamcov_test.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/reads.bam
/usr/lib/python3/dist-packages/pybedtools/test/data/rmsk.hg18.chr21.small.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz
/usr/lib/python3/dist-packages/pybedtools/test/data/small.bam
/usr/lib/python3/dist-packages/pybedtools/test/data/small.fastq
/usr/lib/python3/dist-packages/pybedtools/test/data/snps.bed.gz
/usr/lib/python3/dist-packages/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/tag_test1.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/tag_test2.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/test_bedpe.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/test.fa
/usr/lib/python3/dist-packages/pybedtools/test/data/test.fa.fai
/usr/lib/python3/dist-packages/pybedtools/test/data/test_peaks.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/test_tsses.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/vcf-stderr-test.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/vcf-stderr-test.vcf
/usr/lib/python3/dist-packages/pybedtools/test/data/venn.b.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/venn.c.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/v.vcf
/usr/lib/python3/dist-packages/pybedtools/test/data/x.bam
/usr/lib/python3/dist-packages/pybedtools/test/data/x.bed
/usr/lib/python3/dist-packages/pybedtools/test/data/y.bam
/usr/lib/python3/dist-packages/pybedtools/test/gchart-expected.png
/usr/lib/python3/dist-packages/pybedtools/test/genomepy_integration.py
/usr/lib/python3/dist-packages/pybedtools/test/__init__.py
/usr/lib/python3/dist-packages/pybedtools/test/mpl-expected.png
/usr/lib/python3/dist-packages/pybedtools/test/regression_tests.py
/usr/lib/python3/dist-packages/pybedtools/test/test_1.py
/usr/lib/python3/dist-packages/pybedtools/test/test_cases.yaml
/usr/lib/python3/dist-packages/pybedtools/test/test_cbedtools.py
/usr/lib/python3/dist-packages/pybedtools/test/test_contrib.py
/usr/lib/python3/dist-packages/pybedtools/test/test_gzip_support.py
/usr/lib/python3/dist-packages/pybedtools/test/test_helpers.py
/usr/lib/python3/dist-packages/pybedtools/test/test_issues.py
/usr/lib/python3/dist-packages/pybedtools/test/test_iter.py
/usr/lib/python3/dist-packages/pybedtools/test/test_len_leak.py
/usr/lib/python3/dist-packages/pybedtools/test/test_merge215.yaml
/usr/lib/python3/dist-packages/pybedtools/test/test_merge227.yaml
/usr/lib/python3/dist-packages/pybedtools/test/test_pathlib.py
/usr/lib/python3/dist-packages/pybedtools/test/test_shuffle215.yaml
/usr/lib/python3/dist-packages/pybedtools/test/test_shuffle227.yaml
/usr/lib/python3/dist-packages/pybedtools/test/tfuncs.py
/usr/lib/python3/dist-packages/pybedtools/version.py
/usr/lib/python3/dist-packages/pybedtools/_Window.pyx
/usr/share/doc/python3-pybedtools/changelog.Debian.amd64.gz
/usr/share/doc/python3-pybedtools/changelog.Debian.arm64.gz
/usr/share/doc/python3-pybedtools/changelog.Debian.gz
/usr/share/doc/python3-pybedtools/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.10.0-4+b1	trixie / main	amd64	Debian 13 · main · amd64	12 MiB	16 MiB	pool/main/p/python-pybedtools/python3-pybedtools_0.10.0-4+b1_amd64.deb
0.10.0-4+b1	trixie / main	arm64	Debian 13 · main · arm64	12 MiB	16 MiB	pool/main/p/python-pybedtools/python3-pybedtools_0.10.0-4+b1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.10.0-4+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 796ab08a97bfa97fb05fca4a5b55fc4da1f6b90ceb8ab1d493063332254c0623

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '796ab08a97bfa97fb05fca4a5b55fc4da1f6b90ceb8ab1d493063332254c0623' 'python3-pybedtools_0.10.0-4+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

0.10.0-4+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 889f263b8f0adcc198fbafb42d3be85f1ad5dcc33b2835731720377b706a8c08

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '889f263b8f0adcc198fbafb42d3be85f1ad5dcc33b2835731720377b706a8c08' 'python3-pybedtools_0.10.0-4+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified