Linux workstation

Debian 13 (Trixie) native package

seqsero

Salmonella serotyping from genome sequencing data

Packages / Debian 13 (Trixie) / science / seqsero

Package: seqsero (1.0.1+dfsg-6)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Salmonella serotyping from genome sequencing data

Other Packages Related to seqsero:

  • dep: [python3] [any]

    interactive high-level object-oriented language (default python3 version)

  • dep: [python3-biopython]

    Python3 library for bioinformatics

  • dep: [bwa]

    Burrows-Wheeler Aligner

  • dep: [samtools]

    processing sequence alignments in SAM, BAM and CRAM formats

  • dep: [sra-toolkit]

    utilities for the NCBI Sequence Read Archive

  • sug: ispcr

    Package not available

Download seqsero

ArchitecturePackage SizeInstalled SizeFiles
amd64350 KiB3.4 MiB[list of files]
arm64350 KiB3.4 MiB[list of files]

Percorsi file del pacchetto (90)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/seqsero
  • /usr/bin/seqsero_batch_pair-end
  • /usr/share/doc-base/seqsero.seqsero
  • /usr/share/doc/seqsero/changelog.Debian.gz
  • /usr/share/doc/seqsero/copyright
  • /usr/share/doc/seqsero/examples/single_read.fasta
  • /usr/share/doc/seqsero/examples/sra_data.fastq
  • /usr/share/doc/seqsero/README.Debian
  • /usr/share/doc/seqsero/README.md
  • /usr/share/doc/seqsero/README.test
  • /usr/share/doc/seqsero/run-unit-test
  • /usr/share/doc/seqsero/User_manual.pdf
  • /usr/share/man/man1/seqsero.1.gz
  • /usr/share/man/man1/seqsero_batch_pair-end.1.gz
  • /usr/share/python3/runtime.d/seqsero.rtupdate
  • /usr/share/seqsero/database/complete_oafA.fasta
  • /usr/share/seqsero/database/fliC_b_whole.fasta
  • /usr/share/seqsero/database/FliC_Family_b,d,j_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_fg_special.fasta
  • /usr/share/seqsero/database/FliC_Family_g_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_k_z58_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_k,z_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_l,v_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_r,i_special_genes_short.fasta
  • /usr/share/seqsero/database/FliC_Family_z36z38_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_z44_k_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_z4z23_special_genes.fasta
  • /usr/share/seqsero/database/FliC_f_g_s_whole.fasta
  • /usr/share/seqsero/database/fliC_k,z_whole.fasta
  • /usr/share/seqsero/database/fliC_l_z13_whole.fasta
  • /usr/share/seqsero/database/fliC_r_whole.fasta
  • /usr/share/seqsero/database/fliC_r_whole.fasta.amb
  • /usr/share/seqsero/database/fliC_r_whole.fasta.ann
  • /usr/share/seqsero/database/fliC_r_whole.fasta.bwt
  • /usr/share/seqsero/database/fliC_r_whole.fasta.pac
  • /usr/share/seqsero/database/fliC_r_whole.fasta.sa
  • /usr/share/seqsero/database/fliC_z36,z38_whole.fasta
  • /usr/share/seqsero/database/fliC_z4,z23_family.fasta
  • /usr/share/seqsero/database/fliC_z4z23_whole.fasta
  • /usr/share/seqsero/database/fliC_z58_k_special_sequences.fasta
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.amb
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.ann
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.bwt
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.pac
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.sa
  • /usr/share/seqsero/database/fljB_e,n,z15_whole.fasta
  • /usr/share/seqsero/database/FljB_Family_1_special_genes_all.fasta
  • /usr/share/seqsero/database/FljB_Family_e_special_genes.fasta
  • /usr/share/seqsero/database/FljB_Family_k,z_special_genes.fasta
  • /usr/share/seqsero/database/FljB_Family_l,v_special_genes.fasta
  • /usr/share/seqsero/database/FljB_Family_l,w_special_genes.fasta
  • /usr/share/seqsero/database/FljB_Family_z_special_genes.fasta
  • /usr/share/seqsero/database/FljB_l,z13,z28_whole.fasta
  • /usr/share/seqsero/database/FljB_z6_whole.fasta
  • /usr/share/seqsero/database/H_combine_update_9_03_2014_new.fasta
  • /usr/share/seqsero/database/H_newest_database.fasta
  • /usr/share/seqsero/database/H_new_fliC_protein_database.fasta
  • /usr/share/seqsero/database/H_new_fljB_protein_database.fasta
  • /usr/share/seqsero/database/new_Oserotype.fasta
  • /usr/share/seqsero/database/O_3,10_and_1,3,19_spe.fasta
  • /usr/share/seqsero/database/O_4_wzy_but_not_in_rfb.fasta
  • /usr/share/seqsero/database/oafA_of_O4_O5.fasta
  • /usr/share/seqsero/database/ParaA_rfb.fasta
  • /usr/share/seqsero/database/ParaA_rfb.fasta.amb
  • /usr/share/seqsero/database/ParaA_rfb.fasta.ann
  • /usr/share/seqsero/database/ParaA_rfb.fasta.bwt
  • /usr/share/seqsero/database/ParaA_rfb.fasta.pac
  • /usr/share/seqsero/database/ParaA_rfb.fasta.sa
  • /usr/share/seqsero/database/special_new_O_genes.fasta
  • /usr/share/seqsero/database/special_O_genes.fasta
  • /usr/share/seqsero/database/specific_genes.fasta
  • /usr/share/seqsero/database/Typhimurium_LT2_gnd_galF.fasta
  • /usr/share/seqsero/database/tyr_of_O2_O9.fasta
  • /usr/share/seqsero/libs/BWA_analysis_H_update_new_family_dependent.py
  • /usr/share/seqsero/libs/BWA_analysis_O_new_dependent.py
  • /usr/share/seqsero/libs/compare_and_change_two_fastq_id.py
  • /usr/share/seqsero/libs/deletion_compare.py
  • /usr/share/seqsero/libs/H_combination_output_analysis.py
  • /usr/share/seqsero/libs/Initial_Conditions.py
  • /usr/share/seqsero/libs/Initial_functions.py
  • /usr/share/seqsero/libs/Otype_determine_analysis.py
  • /usr/share/seqsero/libs/run_auto_All_for_assemblies.py
  • /usr/share/seqsero/libs/run_auto_All_for_web_multi_revise.py
  • /usr/share/seqsero/libs/special_gene_test_assemblies.py
  • /usr/share/seqsero/libs/split_interleaved_fastq.pl
  • /usr/share/seqsero/libs/splitPairedEndReads.pl
  • /usr/share/seqsero/primers/seq_primer_fliC.txt
  • /usr/share/seqsero/primers/seq_primer_fljB.txt
  • /usr/share/seqsero/SeqSero.py

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.0.1+dfsg-6trixie / mainamd64Debian 13 · main · amd64350 KiB3.4 MiBpool/main/s/seqsero/seqsero_1.0.1+dfsg-6_amd64.deb
1.0.1+dfsg-6trixie / mainarm64Debian 13 · main · arm64350 KiB3.4 MiBpool/main/s/seqsero/seqsero_1.0.1+dfsg-6_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.0.1+dfsg-6 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 042f2f1e7f49abb9360a13f2443acfd2318dd331cb2a7cb494fa7dcb26713ad6

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '042f2f1e7f49abb9360a13f2443acfd2318dd331cb2a7cb494fa7dcb26713ad6' 'seqsero_1.0.1+dfsg-6_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.0.1+dfsg-6 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: cb8c53e78c65670de9a7590e15ff9516f87dd2890e935bb102221f7bdca44c90

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'cb8c53e78c65670de9a7590e15ff9516f87dd2890e935bb102221f7bdca44c90' 'seqsero_1.0.1+dfsg-6_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified