Debian 13 (Trixie) native package

shasta

nanopore whole genome assembly (binaries and scripts)

Packages / Debian 13 (Trixie) / science / shasta

[Source: shasta]

Package: shasta (0.12.0-1+b3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

[python3-shasta]
nanopore whole genome assembly (dynamic library)
[python3-shasta-doc]
nanopore whole genome assembly (documentation)

nanopore whole genome assembly (binaries and scripts)

Other Packages Related to shasta:

dep: [libboost-chrono1.83.0t64] (>= 1.83.0)
C++ representation of time duration, time point, and clocks
dep: [libboost-program-options1.83.0] (>= 1.83.0)
program options library for C++
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [python3-shasta] (= 0.12.0-1+b3)
nanopore whole genome assembly (dynamic library)

Download shasta

Architecture	Package Size	Installed Size	Files
amd64	611 KiB	2.5 MiB	[list of files]
arm64	601 KiB	2.6 MiB	[list of files]

Percorsi file del pacchetto (160)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/shasta
/usr/share/doc/shasta/AlignOrientedReads1.py
/usr/share/doc/shasta/AlignOrientedReads4.py
/usr/share/doc/shasta/AlignOrientedReads.py
/usr/share/doc/shasta/AnalyzeAlignmentMatrix.py
/usr/share/doc/shasta/AnalyzeAssemblyGraphBubbles.py
/usr/share/doc/shasta/AnalyzeReadGraph.py
/usr/share/doc/shasta/AssembleMarkerGraphEdges.py
/usr/share/doc/shasta/AssembleMarkerGraphVertices.py
/usr/share/doc/shasta/Assemble.py
/usr/share/doc/shasta/AssembleSegment.py
/usr/share/doc/shasta/changelog.Debian.amd64.gz
/usr/share/doc/shasta/changelog.Debian.arm64.gz
/usr/share/doc/shasta/changelog.Debian.gz
/usr/share/doc/shasta/CheckConfigurations.py
/usr/share/doc/shasta/CheckMarkerGraphIsStrandSymmetric.py
/usr/share/doc/shasta/CleanupDuplicateMarkers.py
/usr/share/doc/shasta/CleanupRunDirectory.py
/usr/share/doc/shasta/ClusterMarkerGraphEdgeOrientedReads.py
/usr/share/doc/shasta/ColorGfaBySimilarityToSegment.py
/usr/share/doc/shasta/ColorGfaKeySegments.py
/usr/share/doc/shasta/ColorGfaWithTwoReads.py
/usr/share/doc/shasta/comparePhaseAssignments.py.gz
/usr/share/doc/shasta/ComputeAlignments.py
/usr/share/doc/shasta/ComputeAssemblyStatistics.py
/usr/share/doc/shasta/ComputeMarkerGraphCoverageHistogram.py
/usr/share/doc/shasta/ComputeMarkerGraphVerticesCoverageData.py
/usr/share/doc/shasta/ComputeReadGraphConnectedComponents.py
/usr/share/doc/shasta/ComputeSortedMarkers.py
/usr/share/doc/shasta/CopyDirectory.py
/usr/share/doc/shasta/Copy.py
/usr/share/doc/shasta/copyright
/usr/share/doc/shasta/CreateAndCleanupMarkerGraph.py
/usr/share/doc/shasta/CreateAssemblyGraphEdges.py
/usr/share/doc/shasta/CreateAssemblyGraphVertices.py
/usr/share/doc/shasta/CreateAssembly.py
/usr/share/doc/shasta/CreateCompressedAssemblyGraph.py
/usr/share/doc/shasta/CreateConfigurationTable.py
/usr/share/doc/shasta/CreateLocalSubgraph.py
/usr/share/doc/shasta/CreateMarkerGraphAndTransitiveReduction.py
/usr/share/doc/shasta/CreateMarkerGraphEdges.py
/usr/share/doc/shasta/CreateMarkerGraphEdgesStrict.py
/usr/share/doc/shasta/CreateMarkerGraphSecondaryEdges.py
/usr/share/doc/shasta/CreateMarkerGraphVertices.py
/usr/share/doc/shasta/CreateModules.py
/usr/share/doc/shasta/CreateReadGraph2.py
/usr/share/doc/shasta/CreateReadGraphMode1.py
/usr/share/doc/shasta/CreateReadGraph.py
/usr/share/doc/shasta/CreateReadGraphUsingPseudoPaths.py
/usr/share/doc/shasta/Detangle2.py
/usr/share/doc/shasta/Detangle.py
/usr/share/doc/shasta/dset64Test.py
/usr/share/doc/shasta/examples/conf/HiFi-Oct2021.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Dec2019.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Human-SingleFlowcell-May2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Human-SingleFlowcell-Phased-May2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Jun2020.conf
/usr/share/doc/shasta/examples/conf/Nanopore-May2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-ncm23-May2024.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Oct2021.conf
/usr/share/doc/shasta/examples/conf/Nanopore-OldGuppy-Sep2020.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Phased-Aug2021.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Phased-Jan2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Phased-May2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Phased-R10-Fast-Nov2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Phased-R10-Slow-Nov2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Plants-Apr2021.conf
/usr/share/doc/shasta/examples/conf/Nanopore-R10-Fast-Nov2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-R10-Slow-Nov2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-Sep2020.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-Dec2019.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-iterative-Sep2020.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-Jan2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-Jun2020.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-May2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-Oct2021.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-Jan2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-May2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-Nov2022.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-Oct2021.conf
/usr/share/doc/shasta/examples/conf/Nanopore-UL-Sep2020.conf
/usr/share/doc/shasta/examples/conf/PacBio-CCS-Dec2019.conf
/usr/share/doc/shasta/examples/conf/PacBio-CLR-Dec2019.conf
/usr/share/doc/shasta/examples/conf/README.md
/usr/share/doc/shasta/examples/conf/RemoveConflicts.conf
/usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-10.csv
/usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-11.csv
/usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-2.csv
/usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-3.csv
/usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-5.csv
/usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-6.csv
/usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-7.csv
/usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-8.csv
/usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-9.csv
/usr/share/doc/shasta/examples/TinyTest.fasta.gz
/usr/share/doc/shasta/FastqGzToFasta.py
/usr/share/doc/shasta/FastqToFastaAll.py
/usr/share/doc/shasta/FastqToFasta.py
/usr/share/doc/shasta/FindAlignmentCandidatesLowHash0.py
/usr/share/doc/shasta/FindAssemblyGraphBubbles.py
/usr/share/doc/shasta/FindMarkerGraphReverseComplementEdges.py
/usr/share/doc/shasta/FindMarkerGraphReverseComplementVertices.py
/usr/share/doc/shasta/FindMarkers.py
/usr/share/doc/shasta/FlagChimericReads.py
/usr/share/doc/shasta/FlagCrossStrandReadGraphEdges.py
/usr/share/doc/shasta/FlagInconsistentAlignments.py
/usr/share/doc/shasta/FlagPalindromicReads.py
/usr/share/doc/shasta/FlagPrimaryMarkerGraphEdges.py
/usr/share/doc/shasta/generateBandageLabelsFromAlignment.py
/usr/share/doc/shasta/GenerateConfig.py.gz
/usr/share/doc/shasta/GenerateFeedback.py.gz
/usr/share/doc/shasta/GenerateRandomHaplotypes.py
/usr/share/doc/shasta/GetConfig.py
/usr/share/doc/shasta/GetReadId.py
/usr/share/doc/shasta/HistogramReadLength.py
/usr/share/doc/shasta/InstallPrerequisites-Ubuntu.sh
/usr/share/doc/shasta/Mode2Assembly-A.py.gz
/usr/share/doc/shasta/Mode2Assembly-B-Prepare.py
/usr/share/doc/shasta/Mode2Assembly-B.py
/usr/share/doc/shasta/Mode3AssembleComponent.py
/usr/share/doc/shasta/Mode3Assembly.py
/usr/share/doc/shasta/PruneMarkerGraphStrongSubgraph.py
/usr/share/doc/shasta/ReadGraphClustering.py
/usr/share/doc/shasta/RemoveReadGraphBridges.py
/usr/share/doc/shasta/RestoreRun.py
/usr/share/doc/shasta/RunAssemblies.py
/usr/share/doc/shasta/SaveRun.py
/usr/share/doc/shasta/SetMarkerGraphEdgeFlags.py
/usr/share/doc/shasta/SetupRunDirectory.py
/usr/share/doc/shasta/SetupSmallRunDirectory.py
/usr/share/doc/shasta/SimpleBayesianConsensusCallerCreateBuiltin.py
/usr/share/doc/shasta/SimplifyMarkerGraph.py
/usr/share/doc/shasta/SplitMarkerGraphSecondaryEdges.py
/usr/share/doc/shasta/StepSequence1.py
/usr/share/doc/shasta/SummarizeAssemblies.py
/usr/share/doc/shasta/testGlobalMsa.py
/usr/share/doc/shasta/Test.py
/usr/share/doc/shasta/TestSimpleBayesianConsensusCaller.py
/usr/share/doc/shasta/TransitiveReduction.py
/usr/share/doc/shasta/TravisCheckBuildMacOS.sh
/usr/share/doc/shasta/TravisCheckBuildUbuntu.sh
/usr/share/doc/shasta/WriteAlignmentCandidates.py
/usr/share/doc/shasta/WriteAssemblyGraph.py
/usr/share/doc/shasta/WriteBadMarkerGraphVertices.py
/usr/share/doc/shasta/WriteFasta.py
/usr/share/doc/shasta/WriteGfaBothStrands.py
/usr/share/doc/shasta/WriteGfa.py
/usr/share/doc/shasta/WriteLocalAlignmentCandidateReads.py
/usr/share/doc/shasta/WriteLocalReadGraphReads.py
/usr/share/doc/shasta/WriteMarkers.py
/usr/share/doc/shasta/WriteOrientedReadPath.py
/usr/share/doc/shasta/WriteOrientedRead.py
/usr/share/doc/shasta/WriteOrientedReadsBySegment.py
/usr/share/doc/shasta/WriteParallelMarkerGraphEdges.py
/usr/share/doc/shasta/WritePseudoPath.py
/usr/share/doc/shasta/WriteReadGraphEdges.py
/usr/share/doc/shasta/WriteRead.py
/usr/share/doc/shasta/WriteReads.py
/usr/share/lintian/overrides/shasta
/usr/share/man/man1/shasta.1.gz

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.12.0-1+b3	trixie / main	arm64	Debian 13 · main · arm64	601 KiB	2.6 MiB	pool/main/s/shasta/shasta_0.12.0-1+b3_arm64.deb
0.12.0-1+b2	trixie / main	amd64	Debian 13 · main · amd64	611 KiB	2.5 MiB	pool/main/s/shasta/shasta_0.12.0-1+b2_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.12.0-1+b3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c9ce15fb50b762b17af942d83416a99fa24344004dbbf85986cd61d49380472d

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'c9ce15fb50b762b17af942d83416a99fa24344004dbbf85986cd61d49380472d' 'shasta_0.12.0-1+b3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

0.12.0-1+b2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 62cd7c134c785739c3327404b9a71edad73da7616538967109c8e7d533f1510d

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '62cd7c134c785739c3327404b9a71edad73da7616538967109c8e7d533f1510d' 'shasta_0.12.0-1+b2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified