Debian 13 (Trixie) native package

tnseq-transit

statistical calculations of essentiality of genes or genomic regions

Packages / Debian 13 (Trixie) / science / tnseq-transit

Package: tnseq-transit

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [saclab.tamu.edu]

statistical calculations of essentiality of genes or genomic regions

Nessun record pubblicato corrisponde a questo filtro di suite e architettura.

Percorsi file del pacchetto (107)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/transit
/usr/bin/transit-tpp
/usr/lib/python3/dist-packages/pytpp/__init__.py
/usr/lib/python3/dist-packages/pytpp/__main__.py
/usr/lib/python3/dist-packages/pytpp/tpp_gui.py
/usr/lib/python3/dist-packages/pytpp/tpp_tools.py
/usr/lib/python3/dist-packages/pytransit/analysis/anova.py
/usr/lib/python3/dist-packages/pytransit/analysis/base.py
/usr/lib/python3/dist-packages/pytransit/analysis/binomial.py
/usr/lib/python3/dist-packages/pytransit/analysis/CGI.py
/usr/lib/python3/dist-packages/pytransit/analysis/corrplot.py
/usr/lib/python3/dist-packages/pytransit/analysis/example.py
/usr/lib/python3/dist-packages/pytransit/analysis/gi.py
/usr/lib/python3/dist-packages/pytransit/analysis/griffin.py
/usr/lib/python3/dist-packages/pytransit/analysis/gumbel.py
/usr/lib/python3/dist-packages/pytransit/analysis/heatmap.py
/usr/lib/python3/dist-packages/pytransit/analysis/hmm.py
/usr/lib/python3/dist-packages/pytransit/analysis/__init__.py
/usr/lib/python3/dist-packages/pytransit/analysis/normalize.py
/usr/lib/python3/dist-packages/pytransit/analysis/norm.py
/usr/lib/python3/dist-packages/pytransit/analysis/pathway_enrichment.py
/usr/lib/python3/dist-packages/pytransit/analysis/rankproduct.py
/usr/lib/python3/dist-packages/pytransit/analysis/resampling.py
/usr/lib/python3/dist-packages/pytransit/analysis/tn5gaps.py
/usr/lib/python3/dist-packages/pytransit/analysis/tnseq_stats.py
/usr/lib/python3/dist-packages/pytransit/analysis/ttnfitness.py
/usr/lib/python3/dist-packages/pytransit/analysis/utest.py
/usr/lib/python3/dist-packages/pytransit/analysis/zinb.py
/usr/lib/python3/dist-packages/pytransit/convert/base.py
/usr/lib/python3/dist-packages/pytransit/convert/gff_to_prot_table.py
/usr/lib/python3/dist-packages/pytransit/convert/__init__.py
/usr/lib/python3/dist-packages/pytransit/data/CGI/IDs.H37Rv.CRISPRi.lib.txt
/usr/lib/python3/dist-packages/pytransit/data/CGI/RIF_D1_combined_counts.txt
/usr/lib/python3/dist-packages/pytransit/data/CGI/samples_metadata.txt
/usr/lib/python3/dist-packages/pytransit/data/CGI/sgRNA_info.txt
/usr/lib/python3/dist-packages/pytransit/data/CGI/uninduced_ATC_counts.txt
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_glycerol_combined.dat
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_merged.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep1.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep2.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep3.wig
/usr/lib/python3/dist-packages/pytransit/data/COG_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_merged.wig
/usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep1.wig
/usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep2.wig
/usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs-3-11-18.txt
/usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs.csv
/usr/lib/python3/dist-packages/pytransit/data/GO_term_names.dat
/usr/lib/python3/dist-packages/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt
/usr/lib/python3/dist-packages/pytransit/data/H37Rv_COG_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/H37Rv_GO_terms.txt
/usr/lib/python3/dist-packages/pytransit/data/H37Rv.sanger_associated_RVS.csv
/usr/lib/python3/dist-packages/pytransit/data/H37Rv_sanger_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/iron_combined_wig4.txt
/usr/lib/python3/dist-packages/pytransit/data/iron_samples_metadata.txt
/usr/lib/python3/dist-packages/pytransit/data/README.md
/usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_covar.txt
/usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_interactions.txt
/usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg.txt
/usr/lib/python3/dist-packages/pytransit/data/sanger_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/smeg_COG_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/smeg_GO_terms.txt
/usr/lib/python3/dist-packages/pytransit/DejaVuSans.ttf
/usr/lib/python3/dist-packages/pytransit/draw_trash.py
/usr/lib/python3/dist-packages/pytransit/export/base.py
/usr/lib/python3/dist-packages/pytransit/export/combined_wig.py
/usr/lib/python3/dist-packages/pytransit/export/igv.py
/usr/lib/python3/dist-packages/pytransit/export/__init__.py
/usr/lib/python3/dist-packages/pytransit/export/mean_counts.py
/usr/lib/python3/dist-packages/pytransit/export/prot_table.py
/usr/lib/python3/dist-packages/pytransit/fileDisplay.py
/usr/lib/python3/dist-packages/pytransit/generic_tools/file_system_py.py
/usr/lib/python3/dist-packages/pytransit/generic_tools/__init__.py
/usr/lib/python3/dist-packages/pytransit/genomes/BCG.fna
/usr/lib/python3/dist-packages/pytransit/genomes/BCG.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/genomes.html
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.fna
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD_mod3.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.fna
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.fna
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.fna
/usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.prot_table
/usr/lib/python3/dist-packages/pytransit/images.py
/usr/lib/python3/dist-packages/pytransit/__init__.py
/usr/lib/python3/dist-packages/pytransit/__main__.py
/usr/lib/python3/dist-packages/pytransit/norm_tools.py
/usr/lib/python3/dist-packages/pytransit/qcDisplay.py
/usr/lib/python3/dist-packages/pytransit/stat_tools.py
/usr/lib/python3/dist-packages/pytransit/tnseq_tools.py
/usr/lib/python3/dist-packages/pytransit/transit_gui.py
/usr/lib/python3/dist-packages/pytransit/transit_tools.py
/usr/lib/python3/dist-packages/pytransit/trash.py
/usr/lib/python3/dist-packages/pytransit/view_trash.py
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/requires.txt
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/top_level.txt
/usr/share/doc/tnseq-transit/changelog.Debian.gz
/usr/share/doc/tnseq-transit/changelog.gz
/usr/share/doc/tnseq-transit/copyright
/usr/share/doc/tnseq-transit/README.Debian
/usr/share/man/man1/transit.1.gz
/usr/share/man/man1/transit-tpp.1.gz

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Versioni, suite e repository

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Nessun record pubblicato corrisponde a questo filtro di suite e architettura.

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified