Packages / Debian 13 (Trixie) / science / trinityrnaseq-examples
Package: trinityrnaseq-examples (2.15.2+dfsg-1)
Maintainers:
External Resources:
Homepage: [github.com]
RNA-Seq De novo Assembly common example and testing files
Other Packages Related to trinityrnaseq-examples:
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [r-base-core]
GNU R core of statistical computation and graphics system
rec: [trinityrnaseq]
RNA-Seq De novo Assembly
Download trinityrnaseq-examples
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 286 MiB | 439 MiB | [list of files] |
| arm64 | 286 MiB | 439 MiB | [list of files] |
Percorsi file del pacchetto (414)
Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.
- /usr/lib/trinityrnaseq/sample_data
- /usr/share/doc/trinityrnaseq-examples/changelog.Debian.gz
- /usr/share/doc/trinityrnaseq-examples/changelog.gz
- /usr/share/doc/trinityrnaseq-examples/copyright
- /usr/share/trinityrnaseq/sample_data/Makefile
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/cleanme.pl
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/align_reads_via_bowtie.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/bowtie2.sam.aligned.bam
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.IGV.png
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.reads.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.reads.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.refSeq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex02.refSeq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex2.reads.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex2.reads.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/example2.png
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/region2.sam
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/region2.sam.adj
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex03.refSeq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex3.reads.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex3.reads.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/example3.png
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/region3.sam
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/region3.sam.adj
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex04.refSeq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex4.reads.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex4.reads.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/example4.png
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/region4.sam
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/region4.sam.adj
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/clean.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/clean.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex05.refSeq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex5.reads.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex5.reads.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/example5.png
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.Bfly.dot
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.bed
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/region5.sam
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/region5.sam.adj
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.clean.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex06.refSeq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex6.reads.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex6.reads.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/example6.png
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/region6.sam
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/region6.sam.adj
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex07.refSeq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex7.reads.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex7.reads.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/example7.png
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/region7.sam
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/region7.sam.adj
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex08.refSeq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex8.reads.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex8.reads.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/example8.png
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/region8.sam
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/region8.sam.adj
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex09.refSeq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex9.reads.left.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex9.reads.right.fq
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/example9.png
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/region9.sam
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/region9.sam.adj
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/runMe.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/refSeqs.fa
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/refSeqs.fa.gene_trans_map
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/longReads.fa
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/Makefile
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_abundance_estimation_include_antisense.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_as_DS.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_bowtie_components.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_CuffFly.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe.diff_kmer_length.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_docker.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_full_cleanup.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_include_long_reads.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_cleanup.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_para_iworm.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/runMe_no_qualTrim.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_salmon_no_cleanup.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_salmon.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe.noSeqtk.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_symlinks.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_parallel_iworm_assembly.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_PasaFly.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_piecemeal.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_trin_complete.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_bowtie2.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_my_ramdisk.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_workdir.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_LSF.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_SGE.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.HpcGridRunner.singularity_intra.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming_and_normalization.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming_and_normalize_libs_separately.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_w_monitoring.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_wSuperReads.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_PE_samples_file.min_kmer_cov_3.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_PE_samples_file.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_SE_samples_file.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_docker.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_include_normalization.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_lenient_path_extension.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_NO_normalization.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe.singleFQ.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.intra.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_with_jaccard_clip.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/README
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads2.left.fq.gz
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads2.right.fq.gz
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.left.fa.gz
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.left.fq.gz
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.right.fa.gz
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.right.fq.gz
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/runMe.sh
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/samples.PE.txt
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/samples.SE.txt
- /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/test_FL.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/README.md
- /usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/both.fa.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/inchworm.K25.L25.fa.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/iworm_scaffolds.txt.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/runMe.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/align_and_estimate_tester.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/log.out
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/cleanme.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/drosoph_denovo.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/drosoph_ref.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/mouse_denovo.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/mouse_ref.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/schizo_denovo.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/schizo_ref.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Drosoph_denovo.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Drosoph_ref.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Mouse_denovo.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Mouse_ref.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Schizo_denovo.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Schizo_ref.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/cleanme.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/pairs.Rscript
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/plot_paired_comparisons.Rscript
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/cleanme.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/drosoph_denovo.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/drosoph_ref.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/mouse_denovo.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/mouse_ref.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/schizo_denovo.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/schizo_ref.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Drosoph_denovo.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Drosoph_ref.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Mouse_denovo.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Mouse_ref.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Schizo_denovo.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Schizo_ref.sh
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/cleanme.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/ensure_min_asm.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.ForRev_1.fastq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.ForRev_2.fastq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.left.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.left.stripped.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.right.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.right.stripped.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.Trinity_trans.counts.matrix
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.Trinity_trans.TMM.EXPR.matrix
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/gsnap.cSorted.bam
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/gsnap.cSorted.bam.bai
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads2.left.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads2.right.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.left.fa.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.left.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.right.fa.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.right.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/salmon-quasi-trans.isoform.TMM.EXPR.matrix
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.left.fq
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.left.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.right.fq
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.right.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.left.fq
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.left.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.right.fq
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.right.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.left.fq
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.left.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.right.fq
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.right.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.left.fq
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.left.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.right.fq
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.right.fq.gz
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gene_trans_map
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chromosome
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chromosome.iit
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chrsubset
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.contig
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.contig.iit
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.genomebits128
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.genomecomp
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133offsets64meta
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133offsets64strm
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133positions
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sachildexc
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sachildguide1024
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.saindex64meta
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.saindex64strm
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpchilddc
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpexc
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpguide1024
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sarray
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.version
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/notes
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/test_PtR_PCA
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Trinity_trans.counts.matrix
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Trinity_trans.TMM.EXPR.matrix
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Trinity_trans.TPM.not_cross_norm
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/validate_results.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Makefile
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/samples.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/trans.seq.lengths.txt
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Trinity_genes.counts.matrix
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Trinity_genes.lengths
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Trinity_genes.TMM.EXPR.matrix
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Trinotate_report.xls.gene_ontology
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/validate_results.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/cleanMe.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/compare_dexseq_results.pl
- /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sA_rep1_1.fastq.gz
Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
