Packages / Fedora 43 / Unspecified / python-probeinterface-doc
[Source: python-probeinterface]
Package: python-probeinterface-doc
External Resources:
Homepage: [github.com]
Similar packages:
- [python3-probeinterface]
Handles probe layout, geometry, and wiring to device
Documentation for probeinterface
A Python package to handle the layout, geometry, and wiring of silicon probes
for extracellular electrophysiology experiments.
Goals
Make a lightweight package to handle:
• probe contact geometry (both 2D and 3D layouts)
• probe shape (contour of the probe, shape of channel contact, …)
• probe wiring to device (the physical layout often doesn’t match the channel
ordering)
• combining several probes into a device with global geometry + global wiring
• exporting probe geometry data into JSON files
• loading existing probe geometry files (Neuronexus, imec, Cambridge
Neurotech…) Started here
Bonus:
• optional plotting (based on matplotlib)
• load/save geometry using common formats (PRB, CSV, NWB, …)
• handle SI length units correctly um/mm/…
Target users/project:
• spikeinterface team: integrate this into spikeextractor for channel
location
• neo team: handle array_annotations for AnalogSignal
• spikeforest team: use this package for plotting probe activity
• phy team: integrate for probe display
• spyking-circus team: handle probe with this package
• kilosort team: handle probe with this package
• tridesclous team: handle probe with this package
• open ephys team: automatically generate channel map configuration files
Nessun record pubblicato corrisponde a questo filtro di suite e architettura.
Percorsi file del pacchetto (20)
Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.
- /usr/share/doc/python-probeinterface-doc
- /usr/share/doc/python-probeinterface-doc/examples
- /usr/share/doc/python-probeinterface-doc/examples/ex_01_generate_probe_from_sratch.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_02_probe_2d_probe_3d.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_03_generate_probe_group.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_04_multi_shank_probe.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_05_device_channel_indices.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_06_import_export_to_file.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_07_probe_generator.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_08_more_plotting_examples.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_09_more_complicated_probe.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_10_get_probe_from_library.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_11_automatic_wiring.py
- /usr/share/doc/python-probeinterface-doc/examples/ex_12_plot_values.py
- /usr/share/doc/python-probeinterface-doc/examples/my_two_probe_setup.json
- /usr/share/doc/python-probeinterface-doc/examples/README.rst
- /usr/share/doc/python-probeinterface-doc/examples/two_tetrodes.prb
- /usr/share/doc/python-probeinterface-doc/probeinterface.pdf
- /usr/share/licenses/python-probeinterface-doc
- /usr/share/licenses/python-probeinterface-doc/LICENSE