Fedora 44 native package

python3-steps

STochastic Engine for Pathway Simulation

Packages / Fedora 44 / Unspecified / python3-steps

[Source: python-steps]

Package: python3-steps

External Resources:

Homepage: [steps.sourceforge.net]

Similar packages:

[python3-steps-mpich]
steps built with mpich
[python3-steps-openmpi]
steps built with openmpi

STochastic Engine for Pathway Simulation

STEPS is a package for exact stochastic simulation of reaction-diffusion systems in arbitrarily complex 3D geometries. Our core simulation algorithm is an implementation of Gillespie's SSA, extended to deal with diffusion of molecules over the elements of a 3D tetrahedral mesh. While it was mainly developed for simulating detailed models of neuronal signaling pathways in dendrites and around synapses, it is a general tool and can be used for studying any biochemical pathway in which spatial gradients and morphology are thought to play a role. STEPS also supports accurate and efficient computational of local membrane potentials on tetrahedral meshes, with the addition of voltage-gated channels and currents. Tight integration between the reaction-diffusion calculations and the tetrahedral mesh potentials allows detailed coupling between molecular activity and local electrical excitability. We have implemented STEPS as a set of Python modules, which means STEPS users can use Python scripts to control all aspects of setting up the model, generating a mesh, controlling the simulation and generating and analyzing output. The core computational routines are still implemented as C/C++ extension modules for maximal speed of execution. STEPS 3.0.0 and above provide early parallel solution for stochastic spatial reaction-diffusion and electric field simulation. Documentation can be found here: http://steps.sourceforge.net/manual/manual_index.html

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Percorsi file del pacchetto (154)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

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License text: 5/5
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Recorded total: 100/100

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Authoritative source; repository metadata signature verified, revision 44-everything-x86_64:da3845427d188097f6fd71b417a039bdfb8efefc4f38ca44b5cbb94f95a18991
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