Packages / Debian 12 (Bookworm) / science / augur
Package: augur (20.0.0-1)
Maintainers:
External Resources:
Homepage: [github.com]
pipeline components for real-time virus analysis
Other Packages Related to augur:
dep: [python3-bcbio-gff]
Python3 library to read and write Generic Feature Format
dep: [python3-biopython]
Python3 library for bioinformatics
dep: [python3-cvxopt]
Python3 package for convex optimization
dep: [python3-isodate]
ISO 8601 date/time/duration parser and formatter (Python 3 module)
dep: [python3-jsonschema]
An(other) implementation of JSON Schema (Draft 3, 4, 6, 7)
dep: [python3-networkx]
tool to create, manipulate and study complex networks (Python3)
dep: [python3-numpy]
Fast array facility to the Python 3 language
dep: [python3-packaging]
core utilities for python3 packages
dep: [python3-pandas]
data structures for "relational" or "labeled" data
dep: [python3-pyfastx]
fast random access to sequences from FASTA/Q file - python3 module
dep: [python3-scipy]
scientific tools for Python 3
dep: [python3-treetime] (>= 0.9.4)
inference of time stamped phylogenies and ancestral reconstruction (Python 3)
dep: [python3-xopen] (>= 1.7.0-1~)
Python3 module to open compressed files transparently
dep: [python3] (>= 3.11~) [any]
interactive high-level object-oriented language (default python3 version)
dep: [python3-boto3]
Python interface to Amazon's Web Services - Python 3.x
dep: [python3-dendropy]
DendroPy Phylogenetic Computing Library (Python 3)
dep: [python3-matplotlib]
Python based plotting system in a style similar to Matlab (Python 3)
dep: [python3-schedule]
Job scheduling for humans (Python 3)
dep: [python3-seaborn]
statistical visualization library for Python3
dep: [python3-zstandard]
Python bindings for interfacing with Zstandard library
dep: [seqmagick]
imagemagick-like frontend to Biopython SeqIO
dep: [python3-ipdb]
IPython-based pdb replacement (Python 3 version)
dep: [mafft]
Multiple alignment program for amino acid or nucleotide sequences
dep: [raxml]
Randomized Axelerated Maximum Likelihood of phylogenetic trees
dep: [fasttree]
phylogenetic trees from alignments of nucleotide or protein sequences
dep: [vcftools]
Collection of tools to work with VCF files
rec: [iqtree]
efficient phylogenetic software by maximum likelihood
Download augur
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 183 KiB | 829 KiB | [list of files] |
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Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00