Packages / Debian 12 (Bookworm) / science / augur

Package: augur (20.0.0-1)

pipeline components for real-time virus analysis

Other Packages Related to augur:

  • dep: [python3-bcbio-gff]

    Python3 library to read and write Generic Feature Format

  • dep: [python3-biopython]

    Python3 library for bioinformatics

  • dep: [python3-cvxopt]

    Python3 package for convex optimization

  • dep: [python3-isodate]

    ISO 8601 date/time/duration parser and formatter (Python 3 module)

  • dep: [python3-jsonschema]

    An(other) implementation of JSON Schema (Draft 3, 4, 6, 7)

  • dep: [python3-networkx]

    tool to create, manipulate and study complex networks (Python3)

  • dep: [python3-numpy]

    Fast array facility to the Python 3 language

  • dep: [python3-packaging]

    core utilities for python3 packages

  • dep: [python3-pandas]

    data structures for "relational" or "labeled" data

  • dep: [python3-pyfastx]

    fast random access to sequences from FASTA/Q file - python3 module

  • dep: [python3-scipy]

    scientific tools for Python 3

  • dep: [python3-treetime] (>= 0.9.4)

    inference of time stamped phylogenies and ancestral reconstruction (Python 3)

  • dep: [python3-xopen] (>= 1.7.0-1~)

    Python3 module to open compressed files transparently

  • dep: [python3] (>= 3.11~) [any]

    interactive high-level object-oriented language (default python3 version)

  • dep: [python3-boto3]

    Python interface to Amazon's Web Services - Python 3.x

  • dep: [python3-dendropy]

    DendroPy Phylogenetic Computing Library (Python 3)

  • dep: [python3-matplotlib]

    Python based plotting system in a style similar to Matlab (Python 3)

  • dep: [python3-schedule]

    Job scheduling for humans (Python 3)

  • dep: [python3-seaborn]

    statistical visualization library for Python3

  • dep: [python3-zstandard]

    Python bindings for interfacing with Zstandard library

  • dep: [seqmagick]

    imagemagick-like frontend to Biopython SeqIO

  • dep: [python3-ipdb]

    IPython-based pdb replacement (Python 3 version)

  • dep: [mafft]

    Multiple alignment program for amino acid or nucleotide sequences

  • dep: [raxml]

    Randomized Axelerated Maximum Likelihood of phylogenetic trees

  • dep: [fasttree]

    phylogenetic trees from alignments of nucleotide or protein sequences

  • dep: [vcftools]

    Collection of tools to work with VCF files

  • rec: [iqtree]

    efficient phylogenetic software by maximum likelihood

Download augur

ArchitecturePackage sizeInstalled sizeFilesPackage
all183 KiB829 KiBlist of filesDownload

Percorsi file del pacchetto (0)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

No package-associated file paths were observed for the displayed build metadata.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usa questo pacchetto

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
20.0.0-1bookworm / mainallDebian 12 · main · amd64183 KiB829 KiBpool/main/a/augur/augur_20.0.0-1_all.deb
20.0.0-1bookworm / mainallDebian 12 · main · arm64183 KiB829 KiBpool/main/a/augur/augur_20.0.0-1_all.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

20.0.0-1 / allObserved Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: af76cecb21ea71f78e4fbce03feac9056af9cfde8b4f9d20aeaf229fe38d000f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'af76cecb21ea71f78e4fbce03feac9056af9cfde8b4f9d20aeaf229fe38d000f' 'augur_20.0.0-1_all.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

20.0.0-1 / allObserved Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: af76cecb21ea71f78e4fbce03feac9056af9cfde8b4f9d20aeaf229fe38d000f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'af76cecb21ea71f78e4fbce03feac9056af9cfde8b4f9d20aeaf229fe38d000f' 'augur_20.0.0-1_all.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified