Debian 12 (Bookworm) native package

cd-hit

suite of programs designed to quickly group sequences

Packages / Debian 12 (Bookworm) / science / cd-hit

Package: cd-hit (4.8.1-4)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [weizhongli-lab.org]

suite of programs designed to quickly group sequences

Other Packages Related to cd-hit:

dep: [libc6] (>= 2.14)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libgomp1] (>= 6)
GCC OpenMP (GOMP) support library
dep: [libstdc++6] (>= 5.2)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language

Download cd-hit

Architecture	Package Size	Installed Size	Files
amd64	510 KiB	1.4 MiB	[list of files]
arm64	494 KiB	1.3 MiB	[list of files]

Package file paths (74)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/cd-hit
/usr/bin/cdhit
/usr/bin/cd-hit-2d
/usr/bin/cdhit-2d
/usr/bin/cd-hit-2d-para
/usr/bin/cd-hit-454
/usr/bin/cdhit-454
/usr/bin/cd-hit-div
/usr/bin/cd-hit-est
/usr/bin/cdhit-est
/usr/bin/cd-hit-est-2d
/usr/bin/cdhit-est-2d
/usr/bin/cd-hit-para
/usr/bin/clstr2tree
/usr/bin/clstr_merge
/usr/bin/clstr_merge_noorder
/usr/bin/clstr_reduce
/usr/bin/clstr_renumber
/usr/bin/clstr_rev
/usr/bin/clstr_sort_by
/usr/bin/clstr_sort_prot_by
/usr/bin/make_multi_seq
/usr/lib/cd-hit/cd-hit
/usr/lib/cd-hit/cd-hit-2d
/usr/lib/cd-hit/cd-hit-2d-para.pl
/usr/lib/cd-hit/cd-hit-454
/usr/lib/cd-hit/cd-hit-clstr_2_blm8.pl
/usr/lib/cd-hit/cd-hit-div
/usr/lib/cd-hit/cd-hit-div.pl
/usr/lib/cd-hit/cd-hit-est
/usr/lib/cd-hit/cd-hit-est-2d
/usr/lib/cd-hit/cd-hit-para.pl
/usr/lib/cd-hit/clstr2tree.pl
/usr/lib/cd-hit/clstr2txt.pl
/usr/lib/cd-hit/clstr2xml.pl
/usr/lib/cd-hit/clstr_cut.pl
/usr/lib/cd-hit/clstr_list.pl
/usr/lib/cd-hit/clstr_list_sort.pl
/usr/lib/cd-hit/clstr_merge_noorder.pl
/usr/lib/cd-hit/clstr_merge.pl
/usr/lib/cd-hit/clstr_quality_eval_by_link.pl
/usr/lib/cd-hit/clstr_quality_eval.pl
/usr/lib/cd-hit/clstr_reduce.pl
/usr/lib/cd-hit/clstr_renumber.pl
/usr/lib/cd-hit/clstr_rep.pl
/usr/lib/cd-hit/clstr_reps_faa_rev.pl
/usr/lib/cd-hit/clstr_rev.pl
/usr/lib/cd-hit/clstr_select.pl
/usr/lib/cd-hit/clstr_select_rep.pl
/usr/lib/cd-hit/clstr_size_histogram.pl
/usr/lib/cd-hit/clstr_size_stat.pl
/usr/lib/cd-hit/clstr_sort_by.pl
/usr/lib/cd-hit/clstr_sort_prot_by.pl
/usr/lib/cd-hit/clstr_sql_tbl.pl
/usr/lib/cd-hit/clstr_sql_tbl_sort.pl
/usr/lib/cd-hit/FET.pl
/usr/lib/cd-hit/make_multi_seq.pl
/usr/lib/cd-hit/plot_2d.pl
/usr/lib/cd-hit/plot_len1.pl
/usr/share/doc-base/cd-hit.cd-hit
/usr/share/doc/cd-hit/cdhit-user-guide.pdf
/usr/share/doc/cd-hit/changelog.Debian.gz
/usr/share/doc/cd-hit/changelog.gz
/usr/share/doc/cd-hit/copyright
/usr/share/doc/cd-hit/examples/example.fa
/usr/share/doc/cd-hit/README.Debian
/usr/share/man/man1/cd-hit.1.gz
/usr/share/man/man1/cd-hit-2d.1.gz
/usr/share/man/man1/cd-hit-2d-para.1.gz
/usr/share/man/man1/cd-hit-454.1.gz
/usr/share/man/man1/cd-hit-div.1.gz
/usr/share/man/man1/cd-hit-est.1.gz
/usr/share/man/man1/cd-hit-est-2d.1.gz
/usr/share/man/man1/cd-hit-para.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
4.8.1-4	bookworm / main	amd64	Debian 12 · main · amd64	510 KiB	1.4 MiB	pool/main/c/cd-hit/cd-hit_4.8.1-4_amd64.deb
4.8.1-4	bookworm / main	arm64	Debian 12 · main · arm64	494 KiB	1.3 MiB	pool/main/c/cd-hit/cd-hit_4.8.1-4_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

4.8.1-4 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: af974b29d1037a0c52d4cb211507af0d260a66c44701bc63174e4f79fd356807

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'af974b29d1037a0c52d4cb211507af0d260a66c44701bc63174e4f79fd356807' 'cd-hit_4.8.1-4_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

4.8.1-4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 55bff996f0f5c76fbe456043e2d6323574818441ba1370674f4cd7c79dd9f16e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '55bff996f0f5c76fbe456043e2d6323574818441ba1370674f4cd7c79dd9f16e' 'cd-hit_4.8.1-4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified