Packages / Debian 12 (Bookworm) / science / cd-hit

Package: cd-hit (4.8.1-4)

suite of programs designed to quickly group sequences

Other Packages Related to cd-hit:

  • dep: [libc6] (>= 2.14)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libgomp1] (>= 6)

    GCC OpenMP (GOMP) support library

  • dep: [libstdc++6] (>= 5.2)

    GNU Standard C++ Library v3

  • dep: [zlib1g] (>= 1:1.1.4)

    compression library - runtime

  • dep: [perl] [any]

    Practical Extraction and Report Language di Larry Wall

Download cd-hit

ArchitecturePackage sizeInstalled sizeFilesPackage
amd64510 KiB1.4 MiBlist of filesDownload
arm64494 KiB1.3 MiBlist of filesDownload

Percorsi file del pacchetto (74)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/cd-hit
  • /usr/bin/cdhit
  • /usr/bin/cd-hit-2d
  • /usr/bin/cdhit-2d
  • /usr/bin/cd-hit-2d-para
  • /usr/bin/cd-hit-454
  • /usr/bin/cdhit-454
  • /usr/bin/cd-hit-div
  • /usr/bin/cd-hit-est
  • /usr/bin/cdhit-est
  • /usr/bin/cd-hit-est-2d
  • /usr/bin/cdhit-est-2d
  • /usr/bin/cd-hit-para
  • /usr/bin/clstr2tree
  • /usr/bin/clstr_merge
  • /usr/bin/clstr_merge_noorder
  • /usr/bin/clstr_reduce
  • /usr/bin/clstr_renumber
  • /usr/bin/clstr_rev
  • /usr/bin/clstr_sort_by
  • /usr/bin/clstr_sort_prot_by
  • /usr/bin/make_multi_seq
  • /usr/lib/cd-hit/cd-hit
  • /usr/lib/cd-hit/cd-hit-2d
  • /usr/lib/cd-hit/cd-hit-2d-para.pl
  • /usr/lib/cd-hit/cd-hit-454
  • /usr/lib/cd-hit/cd-hit-clstr_2_blm8.pl
  • /usr/lib/cd-hit/cd-hit-div
  • /usr/lib/cd-hit/cd-hit-div.pl
  • /usr/lib/cd-hit/cd-hit-est
  • /usr/lib/cd-hit/cd-hit-est-2d
  • /usr/lib/cd-hit/cd-hit-para.pl
  • /usr/lib/cd-hit/clstr2tree.pl
  • /usr/lib/cd-hit/clstr2txt.pl
  • /usr/lib/cd-hit/clstr2xml.pl
  • /usr/lib/cd-hit/clstr_cut.pl
  • /usr/lib/cd-hit/clstr_list.pl
  • /usr/lib/cd-hit/clstr_list_sort.pl
  • /usr/lib/cd-hit/clstr_merge_noorder.pl
  • /usr/lib/cd-hit/clstr_merge.pl
  • /usr/lib/cd-hit/clstr_quality_eval_by_link.pl
  • /usr/lib/cd-hit/clstr_quality_eval.pl
  • /usr/lib/cd-hit/clstr_reduce.pl
  • /usr/lib/cd-hit/clstr_renumber.pl
  • /usr/lib/cd-hit/clstr_rep.pl
  • /usr/lib/cd-hit/clstr_reps_faa_rev.pl
  • /usr/lib/cd-hit/clstr_rev.pl
  • /usr/lib/cd-hit/clstr_select.pl
  • /usr/lib/cd-hit/clstr_select_rep.pl
  • /usr/lib/cd-hit/clstr_size_histogram.pl
  • /usr/lib/cd-hit/clstr_size_stat.pl
  • /usr/lib/cd-hit/clstr_sort_by.pl
  • /usr/lib/cd-hit/clstr_sort_prot_by.pl
  • /usr/lib/cd-hit/clstr_sql_tbl.pl
  • /usr/lib/cd-hit/clstr_sql_tbl_sort.pl
  • /usr/lib/cd-hit/FET.pl
  • /usr/lib/cd-hit/make_multi_seq.pl
  • /usr/lib/cd-hit/plot_2d.pl
  • /usr/lib/cd-hit/plot_len1.pl
  • /usr/share/doc-base/cd-hit.cd-hit
  • /usr/share/doc/cd-hit/cdhit-user-guide.pdf
  • /usr/share/doc/cd-hit/changelog.Debian.gz
  • /usr/share/doc/cd-hit/changelog.gz
  • /usr/share/doc/cd-hit/copyright
  • /usr/share/doc/cd-hit/examples/example.fa
  • /usr/share/doc/cd-hit/README.Debian
  • /usr/share/man/man1/cd-hit.1.gz
  • /usr/share/man/man1/cd-hit-2d.1.gz
  • /usr/share/man/man1/cd-hit-2d-para.1.gz
  • /usr/share/man/man1/cd-hit-454.1.gz
  • /usr/share/man/man1/cd-hit-div.1.gz
  • /usr/share/man/man1/cd-hit-est.1.gz
  • /usr/share/man/man1/cd-hit-est-2d.1.gz
  • /usr/share/man/man1/cd-hit-para.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usa questo pacchetto

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
4.8.1-4bookworm / mainamd64Debian 12 · main · amd64510 KiB1.4 MiBpool/main/c/cd-hit/cd-hit_4.8.1-4_amd64.deb
4.8.1-4bookworm / mainarm64Debian 12 · main · arm64494 KiB1.3 MiBpool/main/c/cd-hit/cd-hit_4.8.1-4_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

4.8.1-4 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: af974b29d1037a0c52d4cb211507af0d260a66c44701bc63174e4f79fd356807

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'af974b29d1037a0c52d4cb211507af0d260a66c44701bc63174e4f79fd356807' 'cd-hit_4.8.1-4_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

4.8.1-4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 55bff996f0f5c76fbe456043e2d6323574818441ba1370674f4cd7c79dd9f16e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '55bff996f0f5c76fbe456043e2d6323574818441ba1370674f4cd7c79dd9f16e' 'cd-hit_4.8.1-4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified