Packages / Debian 12 (Bookworm) / science / flye

Package: flye (2.9.1+dfsg-1)

de novo assembler for single molecule sequencing reads using repeat graphs

Other Packages Related to flye:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 11)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [minimap2]
versatile pairwise aligner for genomic and spliced nucleotide sequences
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats

Download flye

Architecture	Package size	Installed size	Files	Package
amd64	22 MiB	36 MiB	list of files	Download
arm64	22 MiB	36 MiB	list of files	Download

Paketdateipfade (69)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/flye
/usr/bin/flye-modules
/usr/lib/python3/dist-packages/flye-2.9.1.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/flye-2.9.1.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/flye-2.9.1.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/flye-2.9.1.egg-info/top_level.txt
/usr/lib/python3/dist-packages/flye/assembly/assemble.py
/usr/lib/python3/dist-packages/flye/assembly/__init__.py
/usr/lib/python3/dist-packages/flye/assembly/repeat_graph.py
/usr/lib/python3/dist-packages/flye/assembly/scaffolder.py
/usr/lib/python3/dist-packages/flye/__build__.py
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_corrected_reads.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_defaults.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_hifi.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_nano_hq.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_raw_reads.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_subasm.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/configurator.py
/usr/lib/python3/dist-packages/flye/config/__init__.py
/usr/lib/python3/dist-packages/flye/config/py_cfg.py
/usr/lib/python3/dist-packages/flye/__init__.py
/usr/lib/python3/dist-packages/flye/main.py
/usr/lib/python3/dist-packages/flye/polishing/alignment.py
/usr/lib/python3/dist-packages/flye/polishing/bubbles.py
/usr/lib/python3/dist-packages/flye/polishing/consensus.py
/usr/lib/python3/dist-packages/flye/polishing/__init__.py
/usr/lib/python3/dist-packages/flye/polishing/polish.py
/usr/lib/python3/dist-packages/flye/repeat_graph/graph_alignment.py
/usr/lib/python3/dist-packages/flye/repeat_graph/__init__.py
/usr/lib/python3/dist-packages/flye/repeat_graph/repeat_graph.py
/usr/lib/python3/dist-packages/flye/short_plasmids/circular_sequences.py
/usr/lib/python3/dist-packages/flye/short_plasmids/__init__.py
/usr/lib/python3/dist-packages/flye/short_plasmids/plasmids.py
/usr/lib/python3/dist-packages/flye/short_plasmids/unmapped_reads.py
/usr/lib/python3/dist-packages/flye/short_plasmids/utils.py
/usr/lib/python3/dist-packages/flye/six.py
/usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb.fasta
/usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads.fastq.gz
/usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz
/usr/lib/python3/dist-packages/flye/tests/__init__.py
/usr/lib/python3/dist-packages/flye/tests/test_toy.py
/usr/lib/python3/dist-packages/flye/trestle/divergence.py
/usr/lib/python3/dist-packages/flye/trestle/graph_resolver.py
/usr/lib/python3/dist-packages/flye/trestle/__init__.py
/usr/lib/python3/dist-packages/flye/trestle/trestle_config.py
/usr/lib/python3/dist-packages/flye/trestle/trestle.py
/usr/lib/python3/dist-packages/flye/utils/bytes2human.py
/usr/lib/python3/dist-packages/flye/utils/fasta_parser.py
/usr/lib/python3/dist-packages/flye/utils/__init__.py
/usr/lib/python3/dist-packages/flye/utils/sam_parser.py
/usr/lib/python3/dist-packages/flye/utils/utils.py
/usr/lib/python3/dist-packages/flye/__version__.py
/usr/share/doc/flye/changelog.Debian.gz
/usr/share/doc/flye/changelog.gz
/usr/share/doc/flye/copyright
/usr/share/doc/flye/FAQ.md.gz
/usr/share/doc/flye/graph_example.png
/usr/share/doc/flye/README.md.gz
/usr/share/doc/flye/USAGE.md.gz
/usr/share/man/man1/flye.1.gz
/usr/share/man/man1/flye-modules.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 12 (Bookworm) im Browser testen Image mit flye bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.9.1+dfsg-1	bookworm / main	amd64	Debian 12 · main · amd64	22 MiB	36 MiB	pool/main/f/flye/flye_2.9.1+dfsg-1_amd64.deb
2.9.1+dfsg-1	bookworm / main	arm64	Debian 12 · main · arm64	22 MiB	36 MiB	pool/main/f/flye/flye_2.9.1+dfsg-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.9.1+dfsg-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3b13b948a991a0a2a6b056a97df7a8d588d031a3a7c4c305a0b4889dca83368f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '3b13b948a991a0a2a6b056a97df7a8d588d031a3a7c4c305a0b4889dca83368f' 'flye_2.9.1+dfsg-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

2.9.1+dfsg-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 49c4efd3e251b2385ad3fbe4f779726d5f2efb951a5e66e30b82384f5634191e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '49c4efd3e251b2385ad3fbe4f779726d5f2efb951a5e66e30b82384f5634191e' 'flye_2.9.1+dfsg-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified