Linux workstation

Debian 12 (Bookworm) native package

hisat2

graph-based alignment of short nucleotide reads to many genomes

Packages / Debian 12 (Bookworm) / science / hisat2

[Source: hisat2]

Package: hisat2 (2.2.1-4+b2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [daehwankimlab.github.io]

Similar packages:

graph-based alignment of short nucleotide reads to many genomes

Other Packages Related to hisat2:

  • dep: [libc6] (>= 2.34)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libstdc++6] (>= 11)

    GNU Standard C++ Library v3

  • dep: [perl] [any]

    Larry Wall's Practical Extraction and Report Language

  • dep: [python3]

    interactive high-level object-oriented language (default python3 version)

  • rec: [python3-hisat2]

    Python scripts accompanying hisat2

  • rec: [bcftools]

    genomic variant calling and manipulation of VCF/BCF files

  • rec: [samtools]

    processing sequence alignments in SAM, BAM and CRAM formats

Download hisat2

ArchitecturePackage SizeInstalled SizeFiles
amd643.5 MiB14 MiB[list of files]
arm643.3 MiB13 MiB[list of files]

Percorsi file del pacchetto (35)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/hisat2
  • /usr/bin/hisat2-align-l
  • /usr/bin/hisat2-align-s
  • /usr/bin/hisat2-build
  • /usr/bin/hisat2-build-l
  • /usr/bin/hisat2-build-s
  • /usr/bin/hisat2-inspect
  • /usr/bin/hisat2-inspect-l
  • /usr/bin/hisat2-inspect-s
  • /usr/share/doc/hisat2/changelog.Debian.amd64.gz
  • /usr/share/doc/hisat2/changelog.Debian.arm64.gz
  • /usr/share/doc/hisat2/changelog.Debian.gz
  • /usr/share/doc/hisat2/copyright
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.1.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.2.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.3.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.4.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.5.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.6.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.7.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.8.ht2
  • /usr/share/doc/hisat2/examples/reads/reads_1.fa
  • /usr/share/doc/hisat2/examples/reads/reads_2.fa
  • /usr/share/doc/hisat2/examples/reference/22_20-21M.fa
  • /usr/share/doc/hisat2/examples/reference/22_20-21M.snp
  • /usr/share/doc/hisat2/MANUAL.gz
  • /usr/share/man/man1/hisat2.1.gz
  • /usr/share/man/man1/hisat2-align-l.1.gz
  • /usr/share/man/man1/hisat2-align-s.1.gz
  • /usr/share/man/man1/hisat2-build.1.gz
  • /usr/share/man/man1/hisat2-build-l.1.gz
  • /usr/share/man/man1/hisat2-build-s.1.gz
  • /usr/share/man/man1/hisat2-inspect.1.gz
  • /usr/share/man/man1/hisat2-inspect-l.1.gz
  • /usr/share/man/man1/hisat2-inspect-s.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usa questo pacchetto

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Prova Debian 12 (Bookworm) nel browserCrea un'immagine che include hisat2

Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
2.2.1-4+b2bookworm / mainamd64Debian 12 · main · amd643.5 MiB14 MiBpool/main/h/hisat2/hisat2_2.2.1-4+b2_amd64.deb
2.2.1-4+b2bookworm / mainarm64Debian 12 · main · arm643.3 MiB13 MiBpool/main/h/hisat2/hisat2_2.2.1-4+b2_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.2.1-4+b2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 350a7f690242019f023a74aad71983563b1381a72fe4eff24e9dabdb509dfb17

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '350a7f690242019f023a74aad71983563b1381a72fe4eff24e9dabdb509dfb17' 'hisat2_2.2.1-4+b2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

2.2.1-4+b2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6336daf4cde3f64a649659c0a504a2cc4799037da0ce747b75bd6c99f89c8660

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '6336daf4cde3f64a649659c0a504a2cc4799037da0ce747b75bd6c99f89c8660' 'hisat2_2.2.1-4+b2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified

hisat2 Package for Debian 12 (Bookworm) | OpenFactory