Debian 12 (Bookworm) native package

ivar

functions broadly useful for viral amplicon-based sequencing

Packages / Debian 12 (Bookworm) / science / ivar

Package: ivar (1.3.1+dfsg-7)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

functions broadly useful for viral amplicon-based sequencing

Other Packages Related to ivar:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libhts3] (>= 1.10)
C library for high-throughput sequencing data formats
dep: [libstdc++6] (>= 11)
GNU Standard C++ Library v3

rec: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats

Download ivar

Architecture	Package Size	Installed Size	Files
amd64	207 KiB	1.4 MiB	[list of files]
arm64	194 KiB	1.4 MiB	[list of files]

Package file paths (53)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/ivar
/usr/share/doc/ivar/changelog.Debian.gz
/usr/share/doc/ivar/COOKBOOK.md
/usr/share/doc/ivar/copyright
/usr/share/doc/ivar/examples/data/db/test_ref.fa
/usr/share/doc/ivar/examples/data/db/test_ref.fa.fai
/usr/share/doc/ivar/examples/data/pair_info_2.tsv
/usr/share/doc/ivar/examples/data/pair_information.tsv
/usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam
/usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam.bai
/usr/share/doc/ivar/examples/data/test_amplicon.sorted.bam
/usr/share/doc/ivar/examples/data/test.bed
/usr/share/doc/ivar/examples/data/test.filtered.tsv
/usr/share/doc/ivar/examples/data/test.gap.fa
/usr/share/doc/ivar/examples/data/test.gap.qual.txt
/usr/share/doc/ivar/examples/data/test.gap.sorted.bam
/usr/share/doc/ivar/examples/data/test.gap.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test.gap.sorted.mpileup
/usr/share/doc/ivar/examples/data/test.gff
/usr/share/doc/ivar/examples/data/test.indel.mpileup
/usr/share/doc/ivar/examples/data/test.indel.tsv
/usr/share/doc/ivar/examples/data/test_isize.bed
/usr/share/doc/ivar/examples/data/test_isize.sorted.bam
/usr/share/doc/ivar/examples/data/test_isize.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test.masked_primer_indices.txt
/usr/share/doc/ivar/examples/data/test_merged.bed
/usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam
/usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test.sorted.bam
/usr/share/doc/ivar/examples/data/test.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test.trimmed.masked.bam
/usr/share/doc/ivar/examples/data/test.trimmed.masked.bam.bai
/usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam
/usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam.bai
/usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam
/usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam.bai
/usr/share/doc/ivar/examples/data/trim_isize.bam
/usr/share/doc/ivar/examples/ref/out-consensus.fa
/usr/share/doc/ivar/examples/ref/out-consensus.qual.txt
/usr/share/doc/ivar/examples/ref/out-filtered.tsv
/usr/share/doc/ivar/examples/ref/out-getmasked.txt
/usr/share/doc/ivar/examples/ref/out-removereads.sam
/usr/share/doc/ivar/examples/ref/out-trim2.sam
/usr/share/doc/ivar/examples/ref/out-trim.sam
/usr/share/doc/ivar/examples/ref/out-variants.tsv
/usr/share/doc/ivar/examples/ref/README.test_data
/usr/share/doc/ivar/MANUAL.md.gz
/usr/share/doc/ivar/README
/usr/share/doc/ivar/README.md.gz
/usr/share/doc/ivar/README.test
/usr/share/doc/ivar/README.test_data
/usr/share/doc/ivar/run-unit-test
/usr/share/man/man1/ivar.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browser Build an image that includes ivar

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.3.1+dfsg-7	bookworm / main	amd64	Debian 12 · main · amd64	207 KiB	1.4 MiB	pool/main/i/ivar/ivar_1.3.1+dfsg-7_amd64.deb
1.3.1+dfsg-7	bookworm / main	arm64	Debian 12 · main · arm64	194 KiB	1.4 MiB	pool/main/i/ivar/ivar_1.3.1+dfsg-7_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.3.1+dfsg-7 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 1e3b7fc1e7cd6cfcfc4898ef2b9616c9c9982aa92964089c2f616dddd120e4b7

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '1e3b7fc1e7cd6cfcfc4898ef2b9616c9c9982aa92964089c2f616dddd120e4b7' 'ivar_1.3.1+dfsg-7_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.3.1+dfsg-7 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 20b67a0e277745213233cc48c558e286d7be816033c1beeb83c6f5a89df5a06f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '20b67a0e277745213233cc48c558e286d7be816033c1beeb83c6f5a89df5a06f' 'ivar_1.3.1+dfsg-7_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified