Debian 12 (Bookworm) native package

libbio-db-hts-perl

Perl interface to the HTS library

Packages / Debian 12 (Bookworm) / science / libbio-db-hts-perl

[Source: libbio-db-hts-perl]

Package: libbio-db-hts-perl (3.01-4+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [metacpan.org]

Perl interface to the HTS library

Other Packages Related to libbio-db-hts-perl:

dep: [perl] (>= 5.36.0-4)
Larry Wall's Practical Extraction and Report Language
dep: perlapi-5.36.0
Package not available
dep: [libc6] (>= 2.14)
GNU C Library: Shared libraries
dep: [libhts3] (>= 1.10)
C library for high-throughput sequencing data formats
dep: [zlib1g] (>= 1:1.2.3.3)
compression library - runtime
dep: [libbio-perl-perl]
BioPerl core perl modules

Download libbio-db-hts-perl

Architecture	Package Size	Installed Size	Files
amd64	153 KiB	444 KiB	[list of files]
arm64	148 KiB	487 KiB	[list of files]

Package file paths (79)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/aarch64-linux-gnu/perl5/5.36/auto/Bio/DB/HTS/Faidx/Faidx.bs
/usr/lib/aarch64-linux-gnu/perl5/5.36/auto/Bio/DB/HTS/Faidx/Faidx.so
/usr/lib/aarch64-linux-gnu/perl5/5.36/auto/Bio/DB/HTS/HTS.bs
/usr/lib/aarch64-linux-gnu/perl5/5.36/auto/Bio/DB/HTS/HTS.so
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Alignment.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/AlignWrapper.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Constants.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Faidx.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/FetchIterator.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Kseq/Iterator.pod
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Kseq.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Kseq/Record.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Pileup.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/PileupWrapper.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Query.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/ReadIterator.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Segment.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Tabix/Iterator.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Tabix.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/Target.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/Header.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/HeaderPtr.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/Iterator.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/Row.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/RowPtr.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/DB/HTS/Faidx/Faidx.bs
/usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/DB/HTS/Faidx/Faidx.so
/usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/DB/HTS/HTS.bs
/usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/DB/HTS/HTS.so
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Alignment.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/AlignWrapper.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Constants.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Faidx.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/FetchIterator.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Kseq/Iterator.pod
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Kseq.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Kseq/Record.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Pileup.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/PileupWrapper.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Query.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/ReadIterator.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Segment.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Tabix/Iterator.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Tabix.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/Target.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/Header.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/HeaderPtr.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/Iterator.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/Row.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/HTS/VCF/RowPtr.pm
/usr/share/doc/libbio-db-hts-perl/changelog.Debian.amd64.gz
/usr/share/doc/libbio-db-hts-perl/changelog.Debian.arm64.gz
/usr/share/doc/libbio-db-hts-perl/changelog.Debian.gz
/usr/share/doc/libbio-db-hts-perl/changelog.gz
/usr/share/doc/libbio-db-hts-perl/copyright
/usr/share/lintian/overrides/libbio-db-hts-perl
/usr/share/man/man3/Bio::DB::HTS.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Alignment.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::AlignWrapper.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Constants.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Faidx.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::FetchIterator.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Kseq.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Kseq::Iterator.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Kseq::Record.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Pileup.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::PileupWrapper.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Query.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::ReadIterator.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Segment.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Tabix.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Tabix::Iterator.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::Target.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::VCF.3pm.gz
/usr/share/man/man3/Bio::DB::HTS::VCF::Iterator.3pm.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browser Build an image that includes libbio-db-hts-perl

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3.01-4+b1	bookworm / main	amd64	Debian 12 · main · amd64	153 KiB	444 KiB	pool/main/libb/libbio-db-hts-perl/libbio-db-hts-perl_3.01-4+b1_amd64.deb
3.01-4+b1	bookworm / main	arm64	Debian 12 · main · arm64	148 KiB	487 KiB	pool/main/libb/libbio-db-hts-perl/libbio-db-hts-perl_3.01-4+b1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.01-4+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e6eb6bed80f9b9ba7a2ac11ea86275b2cb655cd57102d244fe300497a64bf99e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'e6eb6bed80f9b9ba7a2ac11ea86275b2cb655cd57102d244fe300497a64bf99e' 'libbio-db-hts-perl_3.01-4+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

3.01-4+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 277977987781df8e9b3ffb91c461ebf75a2e191b9fa71b3098bcecb12a57e63a

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '277977987781df8e9b3ffb91c461ebf75a2e191b9fa71b3098bcecb12a57e63a' 'libbio-db-hts-perl_3.01-4+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified