Debian 12 (Bookworm) native package

libbio-samtools-perl

Perl interface to SamTools library for DNA sequencing

Packages / Debian 12 (Bookworm) / perl / libbio-samtools-perl

[Source: libbio-samtools-perl]

Package: libbio-samtools-perl (1.43-3+b3)

Maintainers:

Debian Perl Group

External Resources:

Homepage: [metacpan.org]

Perl interface to SamTools library for DNA sequencing

Other Packages Related to libbio-samtools-perl:

dep: [perl] (>= 5.36.0-4)
Larry Wall's Practical Extraction and Report Language
dep: perlapi-5.36.0
Package not available
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [zlib1g] (>= 1:1.2.3.3)
compression library - runtime
dep: [libbio-perl-perl]
BioPerl core perl modules

enh: [gbrowse]
GMOD Generic Genome Browser
enh: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats

Download libbio-samtools-perl

Architecture	Package Size	Installed Size	Files
amd64	183 KiB	594 KiB	[list of files]
arm64	174 KiB	626 KiB	[list of files]

Percorsi file del pacchetto (46)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/bam2bedgraph
/usr/bin/bamToGBrowse.pl
/usr/bin/chrom_sizes.pl
/usr/bin/genomeCoverageBed.pl
/usr/lib/aarch64-linux-gnu/perl5/5.36/auto/Bio/DB/Sam/Sam.bs
/usr/lib/aarch64-linux-gnu/perl5/5.36/auto/Bio/DB/Sam/Sam.so
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Bam/Alignment.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Bam/AlignWrapper.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Bam/FetchIterator.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Bam/Pileup.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Bam/PileupWrapper.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Bam/Query.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Bam/ReadIterator.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Bam/Target.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Sam/Constants.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Sam.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Sam/SamToGBrowse.pm
/usr/lib/aarch64-linux-gnu/perl5/5.36/Bio/DB/Sam/Segment.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/DB/Sam/Sam.bs
/usr/lib/x86_64-linux-gnu/perl5/5.36/auto/Bio/DB/Sam/Sam.so
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Bam/Alignment.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Bam/AlignWrapper.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Bam/FetchIterator.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Bam/Pileup.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Bam/PileupWrapper.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Bam/Query.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Bam/ReadIterator.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Bam/Target.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Sam/Constants.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Sam.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Sam/SamToGBrowse.pm
/usr/lib/x86_64-linux-gnu/perl5/5.36/Bio/DB/Sam/Segment.pm
/usr/share/doc/libbio-samtools-perl/changelog.Debian.amd64.gz
/usr/share/doc/libbio-samtools-perl/changelog.Debian.arm64.gz
/usr/share/doc/libbio-samtools-perl/changelog.Debian.gz
/usr/share/doc/libbio-samtools-perl/changelog.gz
/usr/share/doc/libbio-samtools-perl/copyright
/usr/share/lintian/overrides/libbio-samtools-perl
/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::Query.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::Target.3pm.gz
/usr/share/man/man3/Bio::DB::Sam.3pm.gz
/usr/share/man/man3/Bio::DB::Sam::Constants.3pm.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usa questo pacchetto

OpenFactory può avviare questo sistema operativo in una macchina virtuale del browser, o iniziare una costruzione che include il nome nativo del pacchetto di questo record.

Prova Debian 12 (Bookworm) nel browser Crea un'immagine che include libbio-samtools-perl

Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.43-3+b3	bookworm / main	amd64	Debian 12 · main · amd64	183 KiB	594 KiB	pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-3+b3_amd64.deb
1.43-3+b3	bookworm / main	arm64	Debian 12 · main · arm64	174 KiB	626 KiB	pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-3+b3_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.43-3+b3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 88d87b3342232f2daaa6a4fe537d495079c6084143960265e2d473f55c8cf454

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '88d87b3342232f2daaa6a4fe537d495079c6084143960265e2d473f55c8cf454' 'libbio-samtools-perl_1.43-3+b3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.43-3+b3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 755ab55d80abfefe3ef43a5fe7c0123e9d59e3af6b75d6eb72c0eaa25ffd88a3

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '755ab55d80abfefe3ef43a5fe7c0123e9d59e3af6b75d6eb72c0eaa25ffd88a3' 'libbio-samtools-perl_1.43-3+b3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified