Debian 12 (Bookworm) native package

libvcflib-tools

C++ library for parsing and manipulating VCF files (tools)

Packages / Debian 12 (Bookworm) / science / libvcflib-tools

[Source: libvcflib]

Package: libvcflib-tools (1.0.3+dfsg-2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

[libvcflib1]
C++ library for parsing and manipulating VCF files
[libvcflib-dev]
C++ library for parsing and manipulating VCF files (development)

C++ library for parsing and manipulating VCF files (tools)

Other Packages Related to libvcflib-tools:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libdisorder0] (>= 0.0.2)
library for entropy measurement of byte streams
dep: [libfastahack0] (>= 0.0+git20160702.bbc645f)
library for indexing and sequence extraction from FASTA files (lib)
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libsmithwaterman0] (>= 0.0+git20160702.2610e25)
determine similar regions between two strings or genomic sequences (lib)
dep: [libstdc++6] (>= 11)
GNU Standard C++ Library v3
dep: [libtabixpp0] (>= 1.0.0)
C++ wrapper to tabix indexer
dep: [libvcflib1] (>= 1.0.3+dfsg)
C++ library for parsing and manipulating VCF files
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [r-base-core]
GNU R core of statistical computation and graphics system
dep: [r-cran-plyr]
tools for splitting, applying and combining data
dep: [r-cran-ggplot2]
implementation of the Grammar of Graphics
dep: [r-cran-gridbase]
GNU R Integration of base and grid graphics

sug: [r-cran-pracma]
practical numerical math functions for GNU R

Download libvcflib-tools

Architecture	Package Size	Installed Size	Files
amd64	730 KiB	4.8 MiB	[list of files]
arm64	651 KiB	6.5 MiB	[list of files]

Package file paths (267)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

/usr/bin/vcf2tsv
/usr/bin/vcfallelicprimitives
/usr/bin/vcffilter
/usr/bin/vcffixup
/usr/bin/vcfkeepinfo
/usr/bin/vcflib
/usr/bin/vcfstreamsort
/usr/bin/vcfuniq
/usr/bin/vcfuniqalleles
/usr/lib/R/site-library/vcflib/plotBfst.R
/usr/lib/R/site-library/vcflib/plotHaplotypes.R
/usr/lib/R/site-library/vcflib/plotHapLrt.R
/usr/lib/R/site-library/vcflib/plotPfst.R
/usr/lib/R/site-library/vcflib/plotSmoothed.R
/usr/lib/R/site-library/vcflib/plotWCfst.R
/usr/lib/R/site-library/vcflib/plotXPEHH.R
/usr/lib/vcflib/bin/abba-baba
/usr/lib/vcflib/bin/bed2region
/usr/lib/vcflib/bin/bFst
/usr/lib/vcflib/bin/bgziptabix
/usr/lib/vcflib/bin/dumpContigsFromHeader
/usr/lib/vcflib/bin/genotypeSummary
/usr/lib/vcflib/bin/hapLrt
/usr/lib/vcflib/bin/iHS
/usr/lib/vcflib/bin/meltEHH
/usr/lib/vcflib/bin/normalize-iHS
/usr/lib/vcflib/bin/permuteGPAT++
/usr/lib/vcflib/bin/permuteSmooth
/usr/lib/vcflib/bin/pFst
/usr/lib/vcflib/bin/plotHaps
/usr/lib/vcflib/bin/popStats
/usr/lib/vcflib/bin/pVst
/usr/lib/vcflib/bin/segmentFst
/usr/lib/vcflib/bin/segmentIhs
/usr/lib/vcflib/bin/sequenceDiversity
/usr/lib/vcflib/bin/smoother
/usr/lib/vcflib/bin/vcf2bed.py
/usr/lib/vcflib/bin/vcf2dag
/usr/lib/vcflib/bin/vcf2fasta
/usr/lib/vcflib/bin/vcf2sqlite.py
/usr/lib/vcflib/bin/vcf2tsv
/usr/lib/vcflib/bin/vcfaddinfo
/usr/lib/vcflib/bin/vcfafpath
/usr/lib/vcflib/bin/vcfallelicprimitives
/usr/lib/vcflib/bin/vcfaltcount
/usr/lib/vcflib/bin/vcfannotate
/usr/lib/vcflib/bin/vcfannotategenotypes
/usr/lib/vcflib/bin/vcfbiallelic
/usr/lib/vcflib/bin/vcfbreakmulti
/usr/lib/vcflib/bin/vcfcat
/usr/lib/vcflib/bin/vcfcheck
/usr/lib/vcflib/bin/vcfclassify
/usr/lib/vcflib/bin/vcfcleancomplex
/usr/lib/vcflib/bin/vcfclearid
/usr/lib/vcflib/bin/vcfclearinfo
/usr/lib/vcflib/bin/vcfcombine
/usr/lib/vcflib/bin/vcfcommonsamples
/usr/lib/vcflib/bin/vcfcomplex
/usr/lib/vcflib/bin/vcfcountalleles
/usr/lib/vcflib/bin/vcfcreatemulti
/usr/lib/vcflib/bin/vcfdistance
/usr/lib/vcflib/bin/vcfecho
/usr/lib/vcflib/bin/vcfentropy
/usr/lib/vcflib/bin/vcfevenregions
/usr/lib/vcflib/bin/vcffilter
/usr/lib/vcflib/bin/vcffirstheader
/usr/lib/vcflib/bin/vcffixup
/usr/lib/vcflib/bin/vcfflatten
/usr/lib/vcflib/bin/vcfgeno2alleles
/usr/lib/vcflib/bin/vcfgeno2haplo
/usr/lib/vcflib/bin/vcfgenosamplenames
/usr/lib/vcflib/bin/vcfgenosummarize
/usr/lib/vcflib/bin/vcfgenotypecompare
/usr/lib/vcflib/bin/vcfgenotypes
/usr/lib/vcflib/bin/vcfglbound
/usr/lib/vcflib/bin/vcfglxgt
/usr/lib/vcflib/bin/vcfgtcompare.sh
/usr/lib/vcflib/bin/vcfhetcount
/usr/lib/vcflib/bin/vcfhethomratio
/usr/lib/vcflib/bin/vcfindelproximity
/usr/lib/vcflib/bin/vcfindels
/usr/lib/vcflib/bin/vcfindex
/usr/lib/vcflib/bin/vcfinfo2qual
/usr/lib/vcflib/bin/vcfinfosummarize
/usr/lib/vcflib/bin/vcfintersect
/usr/lib/vcflib/bin/vcfjoincalls
/usr/lib/vcflib/bin/vcfkeepgeno
/usr/lib/vcflib/bin/vcfkeepinfo
/usr/lib/vcflib/bin/vcfkeepsamples
/usr/lib/vcflib/bin/vcfld
/usr/lib/vcflib/bin/vcfleftalign
/usr/lib/vcflib/bin/vcflength
/usr/lib/vcflib/bin/vcfmultiallelic
/usr/lib/vcflib/bin/vcfmultiway
/usr/lib/vcflib/bin/vcfmultiwayscripts
/usr/lib/vcflib/bin/vcfnobiallelicsnps
/usr/lib/vcflib/bin/vcfnoindels
/usr/lib/vcflib/bin/vcfnosnps
/usr/lib/vcflib/bin/vcfnulldotslashdot
/usr/lib/vcflib/bin/vcfnumalt
/usr/lib/vcflib/bin/vcfoverlay
/usr/lib/vcflib/bin/vcfparsealts
/usr/lib/vcflib/bin/vcfplotaltdiscrepancy.r
/usr/lib/vcflib/bin/vcfplotaltdiscrepancy.sh
/usr/lib/vcflib/bin/vcfplotsitediscrepancy.r
/usr/lib/vcflib/bin/vcfplottstv.sh
/usr/lib/vcflib/bin/vcfprimers
/usr/lib/vcflib/bin/vcfprintaltdiscrepancy.r
/usr/lib/vcflib/bin/vcfprintaltdiscrepancy.sh
/usr/lib/vcflib/bin/vcfqual2info
/usr/lib/vcflib/bin/vcfqualfilter
/usr/lib/vcflib/bin/vcfrandom
/usr/lib/vcflib/bin/vcfrandomsample
/usr/lib/vcflib/bin/vcfregionreduce
/usr/lib/vcflib/bin/vcfregionreduce_and_cut
/usr/lib/vcflib/bin/vcfregionreduce_pipe
/usr/lib/vcflib/bin/vcfregionreduce_uncompressed
/usr/lib/vcflib/bin/vcfremap
/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes
/usr/lib/vcflib/bin/vcfremovenonATGC
/usr/lib/vcflib/bin/vcfremovesamples
/usr/lib/vcflib/bin/vcfroc
/usr/lib/vcflib/bin/vcfsample2info
/usr/lib/vcflib/bin/vcfsamplediff
/usr/lib/vcflib/bin/vcfsamplenames
/usr/lib/vcflib/bin/vcfsitesummarize
/usr/lib/vcflib/bin/vcfsnps
/usr/lib/vcflib/bin/vcfsort
/usr/lib/vcflib/bin/vcfstats
/usr/lib/vcflib/bin/vcfstreamsort
/usr/lib/vcflib/bin/vcf_strip_extra_headers
/usr/lib/vcflib/bin/vcfuniq
/usr/lib/vcflib/bin/vcfuniqalleles
/usr/lib/vcflib/bin/vcfvarstats
/usr/lib/vcflib/bin/wcFst
/usr/lib/vcflib/scripts/bed2region
/usr/lib/vcflib/scripts/bgziptabix
/usr/lib/vcflib/scripts/plotBfst.R
/usr/lib/vcflib/scripts/plotHaplotypes.R
/usr/lib/vcflib/scripts/plotHapLrt.R
/usr/lib/vcflib/scripts/plotPfst.R
/usr/lib/vcflib/scripts/plot_roc.r
/usr/lib/vcflib/scripts/plotSmoothed.R
/usr/lib/vcflib/scripts/plotWCfst.R
/usr/lib/vcflib/scripts/plotXPEHH.R
/usr/lib/vcflib/scripts/vcf2bed.py
/usr/lib/vcflib/scripts/vcf2sqlite.py
/usr/lib/vcflib/scripts/vcfbiallelic
/usr/lib/vcflib/scripts/vcfclearid
/usr/lib/vcflib/scripts/vcfclearinfo
/usr/lib/vcflib/scripts/vcfcomplex
/usr/lib/vcflib/scripts/vcffirstheader
/usr/lib/vcflib/scripts/vcfgtcompare.sh
/usr/lib/vcflib/scripts/vcfindelproximity
/usr/lib/vcflib/scripts/vcfindels
/usr/lib/vcflib/scripts/vcfjoincalls
/usr/lib/vcflib/scripts/vcfmultiallelic
/usr/lib/vcflib/scripts/vcfmultiway
/usr/lib/vcflib/scripts/vcfmultiwayscripts
/usr/lib/vcflib/scripts/vcfnobiallelicsnps
/usr/lib/vcflib/scripts/vcfnoindels
/usr/lib/vcflib/scripts/vcfnosnps
/usr/lib/vcflib/scripts/vcfnulldotslashdot
/usr/lib/vcflib/scripts/vcfplotaltdiscrepancy.r
/usr/lib/vcflib/scripts/vcfplotaltdiscrepancy.sh
/usr/lib/vcflib/scripts/vcfplotsitediscrepancy.r
/usr/lib/vcflib/scripts/vcfplottstv.sh
/usr/lib/vcflib/scripts/vcfprintaltdiscrepancy.r
/usr/lib/vcflib/scripts/vcfprintaltdiscrepancy.sh
/usr/lib/vcflib/scripts/vcfqualfilter
/usr/lib/vcflib/scripts/vcfregionreduce
/usr/lib/vcflib/scripts/vcfregionreduce_and_cut
/usr/lib/vcflib/scripts/vcfregionreduce_pipe
/usr/lib/vcflib/scripts/vcfregionreduce_uncompressed
/usr/lib/vcflib/scripts/vcfremovenonATGC
/usr/lib/vcflib/scripts/vcfsnps
/usr/lib/vcflib/scripts/vcfsort
/usr/lib/vcflib/scripts/vcf_strip_extra_headers
/usr/lib/vcflib/scripts/vcfvarstats
/usr/share/doc/libvcflib-tools/changelog.Debian.gz
/usr/share/doc/libvcflib-tools/copyright
/usr/share/lintian/overrides/libvcflib-tools
/usr/share/man/man1/abba-baba.1.gz
/usr/share/man/man1/bFst.1.gz
/usr/share/man/man1/dumpContigsFromHeader.1.gz
/usr/share/man/man1/genotypeSummary.1.gz
/usr/share/man/man1/hapLrt.1.gz
/usr/share/man/man1/iHS.1.gz
/usr/share/man/man1/meltEHH.1.gz
/usr/share/man/man1/normalize-iHS.1.gz
/usr/share/man/man1/permuteGPAT++.1.gz
/usr/share/man/man1/permuteSmooth.1.gz
/usr/share/man/man1/pFst.1.gz
/usr/share/man/man1/plotHaps.1.gz
/usr/share/man/man1/popStats.1.gz
/usr/share/man/man1/pVst.1.gz
/usr/share/man/man1/segmentFst.1.gz
/usr/share/man/man1/segmentIhs.1.gz
/usr/share/man/man1/sequenceDiversity.1.gz
/usr/share/man/man1/smoother.1.gz
/usr/share/man/man1/vcf2dag.1.gz
/usr/share/man/man1/vcf2fasta.1.gz
/usr/share/man/man1/vcf2tsv.1.gz
/usr/share/man/man1/vcfaddinfo.1.gz
/usr/share/man/man1/vcfafpath.1.gz
/usr/share/man/man1/vcfallelicprimitives.1.gz
/usr/share/man/man1/vcfaltcount.1.gz
/usr/share/man/man1/vcfannotate.1.gz
/usr/share/man/man1/vcfannotategenotypes.1.gz
/usr/share/man/man1/vcfbreakmulti.1.gz
/usr/share/man/man1/vcfcat.1.gz
/usr/share/man/man1/vcfcheck.1.gz
/usr/share/man/man1/vcfclassify.1.gz
/usr/share/man/man1/vcfcleancomplex.1.gz
/usr/share/man/man1/vcfcombine.1.gz
/usr/share/man/man1/vcfcommonsamples.1.gz
/usr/share/man/man1/vcfcountalleles.1.gz
/usr/share/man/man1/vcfcreatemulti.1.gz
/usr/share/man/man1/vcfdistance.1.gz
/usr/share/man/man1/vcfecho.1.gz
/usr/share/man/man1/vcfentropy.1.gz
/usr/share/man/man1/vcfevenregions.1.gz
/usr/share/man/man1/vcffilter.1.gz
/usr/share/man/man1/vcffixup.1.gz
/usr/share/man/man1/vcfflatten.1.gz
/usr/share/man/man1/vcfgeno2alleles.1.gz
/usr/share/man/man1/vcfgeno2haplo.1.gz
/usr/share/man/man1/vcfgenosamplenames.1.gz
/usr/share/man/man1/vcfgenosummarize.1.gz
/usr/share/man/man1/vcfgenotypecompare.1.gz
/usr/share/man/man1/vcfgenotypes.1.gz
/usr/share/man/man1/vcfglbound.1.gz
/usr/share/man/man1/vcfglxgt.1.gz
/usr/share/man/man1/vcfhetcount.1.gz
/usr/share/man/man1/vcfhethomratio.1.gz
/usr/share/man/man1/vcfindex.1.gz
/usr/share/man/man1/vcfinfo2qual.1.gz
/usr/share/man/man1/vcfinfosummarize.1.gz
/usr/share/man/man1/vcfintersect.1.gz
/usr/share/man/man1/vcfkeepgeno.1.gz
/usr/share/man/man1/vcfkeepinfo.1.gz
/usr/share/man/man1/vcfkeepsamples.1.gz
/usr/share/man/man1/vcfld.1.gz
/usr/share/man/man1/vcfleftalign.1.gz
/usr/share/man/man1/vcflength.1.gz
/usr/share/man/man1/vcflib.1.gz
/usr/share/man/man1/vcfnulldotslashdot.1.gz
/usr/share/man/man1/vcfnumalt.1.gz
/usr/share/man/man1/vcfoverlay.1.gz
/usr/share/man/man1/vcfparsealts.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browser Build an image that includes libvcflib-tools

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.0.3+dfsg-2	bookworm / main	amd64	Debian 12 · main · amd64	730 KiB	4.8 MiB	pool/main/libv/libvcflib/libvcflib-tools_1.0.3+dfsg-2_amd64.deb
1.0.3+dfsg-2	bookworm / main	arm64	Debian 12 · main · arm64	651 KiB	6.5 MiB	pool/main/libv/libvcflib/libvcflib-tools_1.0.3+dfsg-2_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.0.3+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 925ef0d821beb0acf3ee57df079f57a27c6ae48c6d359b63de3c1ec60da3f133

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '925ef0d821beb0acf3ee57df079f57a27c6ae48c6d359b63de3c1ec60da3f133' 'libvcflib-tools_1.0.3+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.0.3+dfsg-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 644866e2d53c59436419679efda9f4bb946a1fd59ea820c2ecfa6afffd3701f2

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '644866e2d53c59436419679efda9f4bb946a1fd59ea820c2ecfa6afffd3701f2' 'libvcflib-tools_1.0.3+dfsg-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified