Debian 12 (Bookworm) native package

ncbi-entrez-direct

NCBI Entrez utilities on the command line

Packages / Debian 12 (Bookworm) / science / ncbi-entrez-direct

[Source: ncbi-entrez-direct]

Package: ncbi-entrez-direct (19.0.20230216+dfsg-2+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.ncbi.nlm.nih.gov]

NCBI Entrez utilities on the command line

Other Packages Related to ncbi-entrez-direct:

dep: [curl]
command line tool for transferring data with URL syntax
dep: [wget]
retrieves files from the web
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries

rec: [python3] [any]
interactive high-level object-oriented language (default python3 version)

sug: [curl]
command line tool for transferring data with URL syntax
sug: [libxml-simple-perl]
Perl module for reading and writing XML
sug: [libxml2-utils]
GNOME XML library - utilities
sug: [perl] [any]
Larry Wall's Practical Extraction and Report Language

Download ncbi-entrez-direct

Architecture	Package Size	Installed Size	Files
amd64	5.8 MiB	26 MiB	[list of files]
arm64	4.7 MiB	24 MiB	[list of files]

Шляхи файлів пакета (220)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/accn-at-a-time
/usr/bin/amino-acid-composition
/usr/bin/archive-pmc
/usr/bin/archive-pubmed
/usr/bin/asn2ref
/usr/bin/between-two-genes
/usr/bin/blst2tkns
/usr/bin/cit2pmid
/usr/bin/combine-uid-lists
/usr/bin/csv2xml
/usr/bin/custom-index
/usr/bin/difference-uid-lists
/usr/bin/disambiguate-nucleotides
/usr/bin/download-ncbi-data
/usr/bin/download-ncbi-software
/usr/bin/download-pmc
/usr/bin/download-pubmed
/usr/bin/download-sequence
/usr/bin/ds2pme
/usr/bin/edict
/usr/bin/efetch
/usr/bin/efetch.ncbi
/usr/bin/efilter
/usr/bin/einfo
/usr/bin/einfo.ncbi
/usr/bin/elink
/usr/bin/epost
/usr/bin/esample
/usr/bin/esearch
/usr/bin/esummary
/usr/bin/exclude-uid-lists
/usr/bin/expand-current
/usr/bin/fetch-pmc
/usr/bin/fetch-pubmed
/usr/bin/filter-columns
/usr/bin/filter-stop-words
/usr/bin/find-in-gene
/usr/bin/fuse-ranges
/usr/bin/fuse-segments
/usr/bin/gbf2ref
/usr/bin/gbf2xml
/usr/bin/gene2range
/usr/bin/hgvs2spdi
/usr/bin/index-extras
/usr/bin/index-pubmed
/usr/bin/intersect-uid-lists
/usr/bin/join-into-groups-of
/usr/bin/json2xml
/usr/bin/nquire
/usr/bin/phrase-search
/usr/bin/pma2pme
/usr/bin/pm-collect
/usr/bin/pm-prepare
/usr/bin/pm-refresh
/usr/bin/print-columns
/usr/bin/rchive
/usr/bin/ref2pmid
/usr/bin/reorder-columns
/usr/bin/run-ncbi-converter
/usr/bin/scn2xml
/usr/bin/skip-if-file-exists
/usr/bin/snp2hgvs
/usr/bin/snp2tbl
/usr/bin/sort-table
/usr/bin/sort-uniq-count
/usr/bin/sort-uniq-count-rank
/usr/bin/spdi2tbl
/usr/bin/split-at-intron
/usr/bin/stream-pubmed
/usr/bin/tbl2prod
/usr/bin/tbl2xml
/usr/bin/theme-aliases
/usr/bin/transmute
/usr/bin/uniq-table
/usr/bin/word-at-a-time
/usr/bin/xml2fsa
/usr/bin/xml2tbl
/usr/bin/xtract
/usr/bin/xy-plot
/usr/lib/ncbi-entrez-direct/bin/asn2xml
/usr/lib/ncbi-entrez-direct/ecommon.sh
/usr/lib/ncbi-entrez-direct/help/efetch-help.txt
/usr/lib/ncbi-entrez-direct/help/efilter-help.txt
/usr/lib/ncbi-entrez-direct/help/einfo-errors.txt
/usr/lib/ncbi-entrez-direct/help/einfo-help.txt
/usr/lib/ncbi-entrez-direct/help/elink-help.txt
/usr/lib/ncbi-entrez-direct/help/epost-help.txt
/usr/lib/ncbi-entrez-direct/help/esearch-help.txt
/usr/lib/ncbi-entrez-direct/help/esummary-help.txt
/usr/lib/ncbi-entrez-direct/help/nquire-examples.txt
/usr/lib/ncbi-entrez-direct/help/nquire-help.txt
/usr/lib/ncbi-entrez-direct/help/phrase-search-extras.txt
/usr/lib/ncbi-entrez-direct/help/phrase-search-help.txt
/usr/lib/ncbi-entrez-direct/help/rchive-extras.txt
/usr/lib/ncbi-entrez-direct/help/rchive-help.txt
/usr/lib/ncbi-entrez-direct/help/rchive-internal.txt
/usr/lib/ncbi-entrez-direct/help/transmute-extras.txt
/usr/lib/ncbi-entrez-direct/help/transmute-help.txt
/usr/lib/ncbi-entrez-direct/help/tst-efetch.txt
/usr/lib/ncbi-entrez-direct/help/tst-elink.txt
/usr/lib/ncbi-entrez-direct/help/tst-esearch.txt
/usr/lib/ncbi-entrez-direct/help/tst-esummary.txt
/usr/lib/ncbi-entrez-direct/help/unicode-extras.txt
/usr/lib/ncbi-entrez-direct/help/xtract-examples.txt
/usr/lib/ncbi-entrez-direct/help/xtract-help.txt
/usr/lib/ncbi-entrez-direct/help/xtract-internal.txt
/usr/lib/ncbi-entrez-direct/help/xtract-keys.txt
/usr/lib/ncbi-entrez-direct/help/xtract-unix.txt
/usr/lib/ncbi-entrez-direct/nhance.sh
/usr/lib/ncbi-entrez-direct/rchive
/usr/lib/ncbi-entrez-direct/transmute
/usr/lib/ncbi-entrez-direct/xml2json
/usr/lib/ncbi-entrez-direct/xtract
/usr/lib/python3/dist-packages/edirect.py
/usr/share/doc/ncbi-entrez-direct/changelog.Debian.amd64.gz
/usr/share/doc/ncbi-entrez-direct/changelog.Debian.arm64.gz
/usr/share/doc/ncbi-entrez-direct/changelog.Debian.gz
/usr/share/doc/ncbi-entrez-direct/copyright
/usr/share/doc/ncbi-entrez-direct/examples/idx-affil
/usr/share/doc/ncbi-entrez-direct/examples/idx-auid
/usr/share/doc/ncbi-entrez-direct/examples/idx-authors
/usr/share/doc/ncbi-entrez-direct/examples/idx-journals
/usr/share/doc/ncbi-entrez-direct/examples/idx-metadata
/usr/share/doc/ncbi-entrez-direct/examples/idx-pairs
/usr/share/doc/ncbi-entrez-direct/examples/idx-stemmed
/usr/share/doc/ncbi-entrez-direct/examples/idx-words
/usr/share/doc/ncbi-entrez-direct/examples/list1
/usr/share/doc/ncbi-entrez-direct/examples/list2
/usr/share/doc/ncbi-entrez-direct/examples/list3
/usr/share/doc/ncbi-entrez-direct/examples/sample.gbf
/usr/share/doc/ncbi-entrez-direct/examples/sample.json
/usr/share/doc/ncbi-entrez-direct/examples/sample_query.xml
/usr/share/doc/ncbi-entrez-direct/examples/sample.xml
/usr/share/doc/ncbi-entrez-direct/examples/stopwords
/usr/share/doc/ncbi-entrez-direct/examples/test-pubmed-index
/usr/share/doc/ncbi-entrez-direct/NEWS.Debian.gz
/usr/share/doc/ncbi-entrez-direct/README.Debian
/usr/share/doc/ncbi-entrez-direct/README.gz
/usr/share/doc/ncbi-entrez-direct/README.test
/usr/share/doc/ncbi-entrez-direct/run-unit-test
/usr/share/man/man1/accn-at-a-time.1.gz
/usr/share/man/man1/align-columns.1.gz
/usr/share/man/man1/amino-acid-composition.1.gz
/usr/share/man/man1/archive-pmc.1.gz
/usr/share/man/man1/archive-pubmed.1.gz
/usr/share/man/man1/asn2ref.1.gz
/usr/share/man/man1/between-two-genes.1.gz
/usr/share/man/man1/blst2tkns.1.gz
/usr/share/man/man1/cit2pmid.1.gz
/usr/share/man/man1/combine-uid-lists.1.gz
/usr/share/man/man1/csv2xml.1.gz
/usr/share/man/man1/custom-index.1.gz
/usr/share/man/man1/difference-uid-lists.1.gz
/usr/share/man/man1/disambiguate-nucleotides.1.gz
/usr/share/man/man1/download-ncbi-data.1.gz
/usr/share/man/man1/download-ncbi-software.1.gz
/usr/share/man/man1/download-pmc.1.gz
/usr/share/man/man1/download-pubmed.1.gz
/usr/share/man/man1/download-sequence.1.gz
/usr/share/man/man1/ds2pme.1.gz
/usr/share/man/man1/edict.1.gz
/usr/share/man/man1/efetch.1.gz
/usr/share/man/man1/efetch.ncbi.1.gz
/usr/share/man/man1/efilter.1.gz
/usr/share/man/man1/einfo.1.gz
/usr/share/man/man1/einfo.ncbi.1.gz
/usr/share/man/man1/elink.1.gz
/usr/share/man/man1/epost.1.gz
/usr/share/man/man1/esample.1.gz
/usr/share/man/man1/esearch.1.gz
/usr/share/man/man1/esummary.1.gz
/usr/share/man/man1/exclude-uid-lists.1.gz
/usr/share/man/man1/expand-current.1.gz
/usr/share/man/man1/fetch-pmc.1.gz
/usr/share/man/man1/fetch-pubmed.1.gz
/usr/share/man/man1/filter-columns.1.gz
/usr/share/man/man1/filter-stop-words.1.gz
/usr/share/man/man1/find-in-gene.1.gz
/usr/share/man/man1/fuse-ranges.1.gz
/usr/share/man/man1/fuse-segments.1.gz
/usr/share/man/man1/gbf2ref.1.gz
/usr/share/man/man1/gbf2xml.1.gz
/usr/share/man/man1/gene2range.1.gz
/usr/share/man/man1/hgvs2spdi.1.gz
/usr/share/man/man1/index-extras.1.gz
/usr/share/man/man1/index-pubmed.1.gz
/usr/share/man/man1/intersect-uid-lists.1.gz
/usr/share/man/man1/join-into-groups-of.1.gz
/usr/share/man/man1/json2xml.1.gz
/usr/share/man/man1/nquire.1.gz
/usr/share/man/man1/phrase-search.1.gz
/usr/share/man/man1/pma2pme.1.gz
/usr/share/man/man1/pm-collect.1.gz
/usr/share/man/man1/pm-prepare.1.gz
/usr/share/man/man1/pm-refresh.1.gz
/usr/share/man/man1/print-columns.1.gz
/usr/share/man/man1/rchive.1.gz
/usr/share/man/man1/ref2pmid.1.gz
/usr/share/man/man1/reorder-columns.1.gz
/usr/share/man/man1/run-ncbi-converter.1.gz
/usr/share/man/man1/scn2xml.1.gz
/usr/share/man/man1/skip-if-file-exists.1.gz
/usr/share/man/man1/snp2hgvs.1.gz
/usr/share/man/man1/snp2tbl.1.gz
/usr/share/man/man1/sort-table.1.gz
/usr/share/man/man1/sort-uniq-count.1.gz
/usr/share/man/man1/sort-uniq-count-rank.1.gz
/usr/share/man/man1/spdi2tbl.1.gz
/usr/share/man/man1/split-at-intron.1.gz
/usr/share/man/man1/stream-pubmed.1.gz
/usr/share/man/man1/tbl2prod.1.gz
/usr/share/man/man1/tbl2xml.1.gz
/usr/share/man/man1/theme-aliases.1.gz
/usr/share/man/man1/transmute.1.gz
/usr/share/man/man1/uniq-table.1.gz
/usr/share/man/man1/word-at-a-time.1.gz
/usr/share/man/man1/xml2fsa.1.gz
/usr/share/man/man1/xml2tbl.1.gz
/usr/share/man/man1/xtract.1.gz
/usr/share/man/man1/xy-plot.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 12 (Bookworm) у браузері Зібрати образ, що містить ncbi-entrez-direct

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
19.0.20230216+dfsg-2+b1	bookworm / main	amd64	Debian 12 · main · amd64	5.8 MiB	26 MiB	pool/main/n/ncbi-entrez-direct/ncbi-entrez-direct_19.0.20230216+dfsg-2+b1_amd64.deb
19.0.20230216+dfsg-2+b1	bookworm / main	arm64	Debian 12 · main · arm64	4.7 MiB	24 MiB	pool/main/n/ncbi-entrez-direct/ncbi-entrez-direct_19.0.20230216+dfsg-2+b1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

19.0.20230216+dfsg-2+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e0ff9730d71b396d6e29027acdf67d2eb60989390ad5a7e07e46a47401710ffb

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'e0ff9730d71b396d6e29027acdf67d2eb60989390ad5a7e07e46a47401710ffb' 'ncbi-entrez-direct_19.0.20230216+dfsg-2+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

19.0.20230216+dfsg-2+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 522f76172ea9461535ed133b8e7dc589680a17484084047927dc5e050259900e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '522f76172ea9461535ed133b8e7dc589680a17484084047927dc5e050259900e' 'ncbi-entrez-direct_19.0.20230216+dfsg-2+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified