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Debian 12 (Bookworm) native package

python3-biom-format

Biological Observation Matrix (BIOM) format (Python 3)

Packages / Debian 12 (Bookworm) / python / python3-biom-format

[Source: python-biom-format]

Package: python3-biom-format (2.1.12-3+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [biom-format.org]

Similar packages:

Biological Observation Matrix (BIOM) format (Python 3)

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  • dep: [python3-scipy]

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  • dep: [python3] [any]

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  • dep: [libc6] (>= 2.4)

    GNU C Library: Shared libraries

Download python3-biom-format

ArchitecturePackage SizeInstalled SizeFiles
amd64125 KiB738 KiB[list of files]
arm64120 KiB818 KiB[list of files]

Package file paths (53)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/biom
  • /usr/lib/python3/dist-packages/biom/assets/exercise_api.py
  • /usr/lib/python3/dist-packages/biom/assets/exercise_cli.sh
  • /usr/lib/python3/dist-packages/biom/cli/__init__.py
  • /usr/lib/python3/dist-packages/biom/cli/installation_informer.py
  • /usr/lib/python3/dist-packages/biom/cli/metadata_adder.py
  • /usr/lib/python3/dist-packages/biom/cli/metadata_exporter.py
  • /usr/lib/python3/dist-packages/biom/cli/table_converter.py
  • /usr/lib/python3/dist-packages/biom/cli/table_head.py
  • /usr/lib/python3/dist-packages/biom/cli/table_ids.py
  • /usr/lib/python3/dist-packages/biom/cli/table_normalizer.py
  • /usr/lib/python3/dist-packages/biom/cli/table_subsetter.py
  • /usr/lib/python3/dist-packages/biom/cli/table_summarizer.py
  • /usr/lib/python3/dist-packages/biom/cli/table_validator.py
  • /usr/lib/python3/dist-packages/biom/cli/uc_processor.py
  • /usr/lib/python3/dist-packages/biom/cli/util.py
  • /usr/lib/python3/dist-packages/biom/err.py
  • /usr/lib/python3/dist-packages/biom/exception.py
  • /usr/lib/python3/dist-packages/biom/_filter.cpython-311-aarch64-linux-gnu.so
  • /usr/lib/python3/dist-packages/biom/_filter.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/entry_points.txt
  • /usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/requires.txt
  • /usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/biom/__init__.py
  • /usr/lib/python3/dist-packages/biom/parse.py
  • /usr/lib/python3/dist-packages/biom/_subsample.cpython-311-aarch64-linux-gnu.so
  • /usr/lib/python3/dist-packages/biom/_subsample.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/biom/table.py
  • /usr/lib/python3/dist-packages/biom/_transform.cpython-311-aarch64-linux-gnu.so
  • /usr/lib/python3/dist-packages/biom/_transform.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/biom/util.py
  • /usr/lib/python3/dist-packages/examples/min_sparse_otu_table.biom
  • /usr/lib/python3/dist-packages/examples/min_sparse_otu_table_hdf5.biom
  • /usr/lib/python3/dist-packages/examples/obs_md.txt
  • /usr/lib/python3/dist-packages/examples/rich_sparse_otu_table.biom
  • /usr/lib/python3/dist-packages/examples/rich_sparse_otu_table_hdf5.biom
  • /usr/lib/python3/dist-packages/examples/sam_md.txt
  • /usr/share/doc/python3-biom-format/changelog.Debian.amd64.gz
  • /usr/share/doc/python3-biom-format/changelog.Debian.arm64.gz
  • /usr/share/doc/python3-biom-format/changelog.Debian.gz
  • /usr/share/doc/python3-biom-format/changelog.gz
  • /usr/share/doc/python3-biom-format/copyright
  • /usr/share/doc/python3-biom-format/examples/min_sparse_otu_table.biom
  • /usr/share/doc/python3-biom-format/examples/min_sparse_otu_table_hdf5.biom
  • /usr/share/doc/python3-biom-format/examples/obs_md.txt
  • /usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table.biom
  • /usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table_hdf5.biom
  • /usr/share/doc/python3-biom-format/examples/sam_md.txt
  • /usr/share/doc/python3-biom-format/README.test
  • /usr/share/doc/python3-biom-format/run-unit-test
  • /usr/share/man/man1/biom.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
2.1.12-3+b1bookworm / mainamd64Debian 12 · main · amd64125 KiB738 KiBpool/main/p/python-biom-format/python3-biom-format_2.1.12-3+b1_amd64.deb
2.1.12-3+b1bookworm / mainarm64Debian 12 · main · arm64120 KiB818 KiBpool/main/p/python-biom-format/python3-biom-format_2.1.12-3+b1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.1.12-3+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 82015644e695b13e8388f42e2cdca11469f7a7177b67d46e898e9a8486777df2

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '82015644e695b13e8388f42e2cdca11469f7a7177b67d46e898e9a8486777df2' 'python3-biom-format_2.1.12-3+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

2.1.12-3+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 984a7bc0f23ca2ab8588871e3599ca1162f47c736db339d6867546915bf80372

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '984a7bc0f23ca2ab8588871e3599ca1162f47c736db339d6867546915bf80372' 'python3-biom-format_2.1.12-3+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified

python3-biom-format Package for Debian 12 (Bookworm) | OpenFactory