Packages / Debian 12 (Bookworm) / python / python3-cogent3
Package: python3-cogent3
Maintainers:
External Resources:
Homepage: [github.com]
Similar packages:
- [python-cogent-doc]
docs for python3-cogent3
framework for genomic biology
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Paketdateipfade (391)
Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.
- /usr/lib/python3/dist-packages/cogent3-2023.2.12a1.dist-info/METADATA
- /usr/lib/python3/dist-packages/cogent3-2023.2.12a1.dist-info/RECORD
- /usr/lib/python3/dist-packages/cogent3-2023.2.12a1.dist-info/WHEEL
- /usr/lib/python3/dist-packages/cogent3/align/align.py
- /usr/lib/python3/dist-packages/cogent3/align/compare_numba.py
- /usr/lib/python3/dist-packages/cogent3/align/dp_calculation.py
- /usr/lib/python3/dist-packages/cogent3/align/indel_model.py
- /usr/lib/python3/dist-packages/cogent3/align/indel_positions.py
- /usr/lib/python3/dist-packages/cogent3/align/__init__.py
- /usr/lib/python3/dist-packages/cogent3/align/pairwise_pogs_numba.py
- /usr/lib/python3/dist-packages/cogent3/align/pairwise.py
- /usr/lib/python3/dist-packages/cogent3/align/pairwise_seqs_numba.py
- /usr/lib/python3/dist-packages/cogent3/align/progressive.py
- /usr/lib/python3/dist-packages/cogent3/align/pycompare.py
- /usr/lib/python3/dist-packages/cogent3/align/traceback.py
- /usr/lib/python3/dist-packages/cogent3/app/align.py
- /usr/lib/python3/dist-packages/cogent3/app/composable.py
- /usr/lib/python3/dist-packages/cogent3/app/data_store_new.py
- /usr/lib/python3/dist-packages/cogent3/app/data_store.py
- /usr/lib/python3/dist-packages/cogent3/app/dist.py
- /usr/lib/python3/dist-packages/cogent3/app/evo.py
- /usr/lib/python3/dist-packages/cogent3/app/__init__.py
- /usr/lib/python3/dist-packages/cogent3/app/io_new.py
- /usr/lib/python3/dist-packages/cogent3/app/io.py
- /usr/lib/python3/dist-packages/cogent3/app/result.py
- /usr/lib/python3/dist-packages/cogent3/app/sample.py
- /usr/lib/python3/dist-packages/cogent3/app/sqlite_data_store.py
- /usr/lib/python3/dist-packages/cogent3/app/translate.py
- /usr/lib/python3/dist-packages/cogent3/app/tree.py
- /usr/lib/python3/dist-packages/cogent3/app/typing.py
- /usr/lib/python3/dist-packages/cogent3/cluster/__init__.py
- /usr/lib/python3/dist-packages/cogent3/cluster/UPGMA.py
- /usr/lib/python3/dist-packages/cogent3/core/alignment.py
- /usr/lib/python3/dist-packages/cogent3/core/alphabet.py
- /usr/lib/python3/dist-packages/cogent3/core/annotation.py
- /usr/lib/python3/dist-packages/cogent3/core/genetic_code.py
- /usr/lib/python3/dist-packages/cogent3/core/info.py
- /usr/lib/python3/dist-packages/cogent3/core/__init__.py
- /usr/lib/python3/dist-packages/cogent3/core/location.py
- /usr/lib/python3/dist-packages/cogent3/core/moltype.py
- /usr/lib/python3/dist-packages/cogent3/core/profile.py
- /usr/lib/python3/dist-packages/cogent3/core/sequence.py
- /usr/lib/python3/dist-packages/cogent3/core/tree.py
- /usr/lib/python3/dist-packages/cogent3/data/energy_params.py
- /usr/lib/python3/dist-packages/cogent3/data/__init__.py
- /usr/lib/python3/dist-packages/cogent3/data/molecular_weight.py
- /usr/lib/python3/dist-packages/cogent3/draw/dendrogram.py
- /usr/lib/python3/dist-packages/cogent3/draw/dotplot.py
- /usr/lib/python3/dist-packages/cogent3/draw/drawable.py
- /usr/lib/python3/dist-packages/cogent3/draw/__init__.py
- /usr/lib/python3/dist-packages/cogent3/draw/letter.py
- /usr/lib/python3/dist-packages/cogent3/draw/logo.py
- /usr/lib/python3/dist-packages/cogent3/evolve/best_likelihood.py
- /usr/lib/python3/dist-packages/cogent3/evolve/bootstrap.py
- /usr/lib/python3/dist-packages/cogent3/evolve/coevolution.py
- /usr/lib/python3/dist-packages/cogent3/evolve/discrete_markov.py
- /usr/lib/python3/dist-packages/cogent3/evolve/distance.py
- /usr/lib/python3/dist-packages/cogent3/evolve/fast_distance.py
- /usr/lib/python3/dist-packages/cogent3/evolve/__init__.py
- /usr/lib/python3/dist-packages/cogent3/evolve/likelihood_calculation.py
- /usr/lib/python3/dist-packages/cogent3/evolve/likelihood_function.py
- /usr/lib/python3/dist-packages/cogent3/evolve/likelihood_tree_numba.py
- /usr/lib/python3/dist-packages/cogent3/evolve/likelihood_tree.py
- /usr/lib/python3/dist-packages/cogent3/evolve/models.py
- /usr/lib/python3/dist-packages/cogent3/evolve/motif_prob_model.py
- /usr/lib/python3/dist-packages/cogent3/evolve/ns_substitution_model.py
- /usr/lib/python3/dist-packages/cogent3/evolve/pairwise_distance_numba.py
- /usr/lib/python3/dist-packages/cogent3/evolve/parameter_controller.py
- /usr/lib/python3/dist-packages/cogent3/evolve/predicate.py
- /usr/lib/python3/dist-packages/cogent3/evolve/simulate.py
- /usr/lib/python3/dist-packages/cogent3/evolve/solved_models_numba.py
- /usr/lib/python3/dist-packages/cogent3/evolve/solved_models.py
- /usr/lib/python3/dist-packages/cogent3/evolve/substitution_calculation.py
- /usr/lib/python3/dist-packages/cogent3/evolve/substitution_model.py
- /usr/lib/python3/dist-packages/cogent3/format/alignment.py
- /usr/lib/python3/dist-packages/cogent3/format/bedgraph.py
- /usr/lib/python3/dist-packages/cogent3/format/clustal.py
- /usr/lib/python3/dist-packages/cogent3/format/fasta.py
- /usr/lib/python3/dist-packages/cogent3/format/gde.py
- /usr/lib/python3/dist-packages/cogent3/format/__init__.py
- /usr/lib/python3/dist-packages/cogent3/format/nexus.py
- /usr/lib/python3/dist-packages/cogent3/format/paml.py
- /usr/lib/python3/dist-packages/cogent3/format/phylip.py
- /usr/lib/python3/dist-packages/cogent3/format/table.py
- /usr/lib/python3/dist-packages/cogent3/format/util.py
- /usr/lib/python3/dist-packages/cogent3/__init__.py
- /usr/lib/python3/dist-packages/cogent3/maths/distance_transform.py
- /usr/lib/python3/dist-packages/cogent3/maths/geometry.py
- /usr/lib/python3/dist-packages/cogent3/maths/__init__.py
- /usr/lib/python3/dist-packages/cogent3/maths/markov.py
- /usr/lib/python3/dist-packages/cogent3/maths/matrix_exponential_integration.py
- /usr/lib/python3/dist-packages/cogent3/maths/matrix_exponentiation.py
- /usr/lib/python3/dist-packages/cogent3/maths/matrix_logarithm.py
- /usr/lib/python3/dist-packages/cogent3/maths/measure.py
- /usr/lib/python3/dist-packages/cogent3/maths/optimisers.py
- /usr/lib/python3/dist-packages/cogent3/maths/period_numba.py
- /usr/lib/python3/dist-packages/cogent3/maths/period.py
- /usr/lib/python3/dist-packages/cogent3/maths/scipy_optimisers.py
- /usr/lib/python3/dist-packages/cogent3/maths/scipy_optimize.py
- /usr/lib/python3/dist-packages/cogent3/maths/simannealingoptimiser.py
- /usr/lib/python3/dist-packages/cogent3/maths/solve.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/contingency.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/distribution.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/information_criteria.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/__init__.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/jackknife.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/kendall.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/ks.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/number.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/period.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/special.py
- /usr/lib/python3/dist-packages/cogent3/maths/stats/test.py
- /usr/lib/python3/dist-packages/cogent3/maths/util.py
- /usr/lib/python3/dist-packages/cogent3/parse/blast.py
- /usr/lib/python3/dist-packages/cogent3/parse/blast_xml.py
- /usr/lib/python3/dist-packages/cogent3/parse/cigar.py
- /usr/lib/python3/dist-packages/cogent3/parse/cisbp.py
- /usr/lib/python3/dist-packages/cogent3/parse/clustal.py
- /usr/lib/python3/dist-packages/cogent3/parse/cogent3_json.py
- /usr/lib/python3/dist-packages/cogent3/parse/dialign.py
- /usr/lib/python3/dist-packages/cogent3/parse/ebi.py
- /usr/lib/python3/dist-packages/cogent3/parse/fasta.py
- /usr/lib/python3/dist-packages/cogent3/parse/gbseq.py
- /usr/lib/python3/dist-packages/cogent3/parse/gcg.py
- /usr/lib/python3/dist-packages/cogent3/parse/genbank.py
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- /usr/lib/python3/dist-packages/cogent3/parse/greengenes.py
- /usr/lib/python3/dist-packages/cogent3/parse/__init__.py
- /usr/lib/python3/dist-packages/cogent3/parse/jaspar.py
- /usr/lib/python3/dist-packages/cogent3/parse/locuslink.py
- /usr/lib/python3/dist-packages/cogent3/parse/ncbi_taxonomy.py
- /usr/lib/python3/dist-packages/cogent3/parse/newick.py
- /usr/lib/python3/dist-packages/cogent3/parse/nexus.py
- /usr/lib/python3/dist-packages/cogent3/parse/paml_matrix.py
- /usr/lib/python3/dist-packages/cogent3/parse/paml.py
- /usr/lib/python3/dist-packages/cogent3/parse/phylip.py
- /usr/lib/python3/dist-packages/cogent3/parse/psl.py
- /usr/lib/python3/dist-packages/cogent3/parse/rdb.py
- /usr/lib/python3/dist-packages/cogent3/parse/record_finder.py
- /usr/lib/python3/dist-packages/cogent3/parse/record.py
- /usr/lib/python3/dist-packages/cogent3/parse/sequence.py
- /usr/lib/python3/dist-packages/cogent3/parse/table.py
- /usr/lib/python3/dist-packages/cogent3/parse/tinyseq.py
- /usr/lib/python3/dist-packages/cogent3/parse/tree.py
- /usr/lib/python3/dist-packages/cogent3/parse/tree_xml.py
- /usr/lib/python3/dist-packages/cogent3/parse/unigene.py
- /usr/lib/python3/dist-packages/cogent3/phylo/consensus.py
- /usr/lib/python3/dist-packages/cogent3/phylo/__init__.py
- /usr/lib/python3/dist-packages/cogent3/phylo/least_squares.py
- /usr/lib/python3/dist-packages/cogent3/phylo/maximum_likelihood.py
- /usr/lib/python3/dist-packages/cogent3/phylo/nj.py
- /usr/lib/python3/dist-packages/cogent3/phylo/tree_collection.py
- /usr/lib/python3/dist-packages/cogent3/phylo/tree_space.py
- /usr/lib/python3/dist-packages/cogent3/phylo/util.py
- /usr/lib/python3/dist-packages/cogent3/recalculation/calculation.py
- /usr/lib/python3/dist-packages/cogent3/recalculation/definition.py
- /usr/lib/python3/dist-packages/cogent3/recalculation/__init__.py
- /usr/lib/python3/dist-packages/cogent3/recalculation/scope.py
- /usr/lib/python3/dist-packages/cogent3/recalculation/setting.py
- /usr/lib/python3/dist-packages/cogent3/util/checkpointing.py
- /usr/lib/python3/dist-packages/cogent3/util/deserialise.py
- /usr/lib/python3/dist-packages/cogent3/util/dict_array.py
- /usr/lib/python3/dist-packages/cogent3/util/__init__.py
- /usr/lib/python3/dist-packages/cogent3/util/io.py
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- /usr/lib/python3/dist-packages/cogent3/util/progress_display.py
- /usr/lib/python3/dist-packages/cogent3/util/recode_alignment.py
- /usr/lib/python3/dist-packages/cogent3/util/table.py
- /usr/lib/python3/dist-packages/cogent3/util/transform.py
- /usr/lib/python3/dist-packages/cogent3/util/union_dict.py
- /usr/lib/python3/dist-packages/cogent3/util/warning.py
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