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Debian 12 (Bookworm) native package

python3-pairtools

Framework to process sequencing data from a Hi-C experiment

Packages / Debian 12 (Bookworm) / python / python3-pairtools

[Source: pairtools]

Package: python3-pairtools (1.0.2-2+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

Framework to process sequencing data from a Hi-C experiment

Other Packages Related to python3-pairtools:

  • dep: [libc6] (>= 2.14)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libstdc++6] (>= 11)

    GNU Standard C++ Library v3

  • dep: [cython3]

    C-Extensions for Python 3

  • dep: [python3] (<< 3.12)

    interactive high-level object-oriented language (default python3 version)

  • dep: [python3] (>= 3.11~)

    interactive high-level object-oriented language (default python3 version)

  • dep: [python3-bioframe]

    library to enable flexible, scalable operations on genomic interval dataframes

  • dep: [python3-click]

    Wrapper around optparse for command line utilities - Python 3.x

  • dep: [python3-numpy] (>= 1:1.22.0)

    Fast array facility to the Python 3 language

  • dep: python3-numpy-abi9

    Package not available

  • dep: [python3-pandas]

    data structures for "relational" or "labeled" data

  • dep: [python3-pysam] (>= 0.20.0+ds-3~)

    interface for the SAM/BAM sequence alignment and mapping format (Python 3)

  • dep: [python3-scipy]

    scientific tools for Python 3

  • dep: [python3-yaml]

    YAML parser and emitter for Python3

  • dep: [python3] [any]

    interactive high-level object-oriented language (default python3 version)

Download python3-pairtools

ArchitecturePackage SizeInstalled SizeFiles
amd64162 KiB685 KiB[list of files]
arm64148 KiB702 KiB[list of files]

Package file paths (51)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/pairtools
  • /usr/lib/python3/dist-packages/pairtools-1.0.2.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/pairtools-1.0.2.egg-info/entry_points.txt
  • /usr/lib/python3/dist-packages/pairtools-1.0.2.egg-info/not-zip-safe
  • /usr/lib/python3/dist-packages/pairtools-1.0.2.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/pairtools-1.0.2.egg-info/requires.txt
  • /usr/lib/python3/dist-packages/pairtools-1.0.2.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/pairtools/cli/dedup.py
  • /usr/lib/python3/dist-packages/pairtools/cli/filterbycov.py
  • /usr/lib/python3/dist-packages/pairtools/cli/flip.py
  • /usr/lib/python3/dist-packages/pairtools/cli/header.py
  • /usr/lib/python3/dist-packages/pairtools/cli/__init__.py
  • /usr/lib/python3/dist-packages/pairtools/cli/markasdup.py
  • /usr/lib/python3/dist-packages/pairtools/cli/merge.py
  • /usr/lib/python3/dist-packages/pairtools/cli/parse2.py
  • /usr/lib/python3/dist-packages/pairtools/cli/parse.py
  • /usr/lib/python3/dist-packages/pairtools/cli/phase.py
  • /usr/lib/python3/dist-packages/pairtools/cli/restrict.py
  • /usr/lib/python3/dist-packages/pairtools/cli/sample.py
  • /usr/lib/python3/dist-packages/pairtools/cli/scaling.py
  • /usr/lib/python3/dist-packages/pairtools/cli/select.py
  • /usr/lib/python3/dist-packages/pairtools/cli/sort.py
  • /usr/lib/python3/dist-packages/pairtools/cli/split.py
  • /usr/lib/python3/dist-packages/pairtools/cli/stats.py
  • /usr/lib/python3/dist-packages/pairtools/__init__.py
  • /usr/lib/python3/dist-packages/pairtools/lib/dedup_cython.cpython-311-aarch64-linux-gnu.so
  • /usr/lib/python3/dist-packages/pairtools/lib/dedup_cython.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/pairtools/lib/dedup.py
  • /usr/lib/python3/dist-packages/pairtools/lib/fileio.py
  • /usr/lib/python3/dist-packages/pairtools/lib/filterbycov.py
  • /usr/lib/python3/dist-packages/pairtools/lib/headerops.py
  • /usr/lib/python3/dist-packages/pairtools/lib/__init__.py
  • /usr/lib/python3/dist-packages/pairtools/lib/pairsam_format.py
  • /usr/lib/python3/dist-packages/pairtools/lib/parse.py
  • /usr/lib/python3/dist-packages/pairtools/lib/parse_pysam.cpython-311-aarch64-linux-gnu.so
  • /usr/lib/python3/dist-packages/pairtools/lib/parse_pysam.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/pairtools/lib/phase.py
  • /usr/lib/python3/dist-packages/pairtools/lib/regions.cpython-311-aarch64-linux-gnu.so
  • /usr/lib/python3/dist-packages/pairtools/lib/regions.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/pairtools/lib/restrict.py
  • /usr/lib/python3/dist-packages/pairtools/lib/scaling.py
  • /usr/lib/python3/dist-packages/pairtools/lib/select.py
  • /usr/lib/python3/dist-packages/pairtools/lib/stats.py
  • /usr/lib/python3/dist-packages/pairtools/_logging.py
  • /usr/lib/python3/dist-packages/pairtools/__main__.py
  • /usr/share/doc/python3-pairtools/changelog.Debian.amd64.gz
  • /usr/share/doc/python3-pairtools/changelog.Debian.arm64.gz
  • /usr/share/doc/python3-pairtools/changelog.Debian.gz
  • /usr/share/doc/python3-pairtools/changelog.gz
  • /usr/share/doc/python3-pairtools/copyright
  • /usr/share/doc/python3-pairtools/README.test

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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Try Debian 12 (Bookworm) in the browserBuild an image that includes python3-pairtools

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.0.2-2+b1bookworm / mainamd64Debian 12 · main · amd64162 KiB685 KiBpool/main/p/pairtools/python3-pairtools_1.0.2-2+b1_amd64.deb
1.0.2-2+b1bookworm / mainarm64Debian 12 · main · arm64148 KiB702 KiBpool/main/p/pairtools/python3-pairtools_1.0.2-2+b1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.0.2-2+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: ac685faeb4b2619bca8ae60b81a9a257f6efaf8e5a1f19d97a646e2fa1d51750

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'ac685faeb4b2619bca8ae60b81a9a257f6efaf8e5a1f19d97a646e2fa1d51750' 'python3-pairtools_1.0.2-2+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.0.2-2+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 66cff4a69409800bd2be632f03178b61a66ecb1539acc5e0c38d1141d3817999

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '66cff4a69409800bd2be632f03178b61a66ecb1539acc5e0c38d1141d3817999' 'python3-pairtools_1.0.2-2+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified

python3-pairtools Package for Debian 12 (Bookworm) | OpenFactory