Debian 12 (Bookworm) native package

r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-genomicranges

Package: r-bioc-genomicranges (1.50.2+dfsg-1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

BioConductor representation and manipulation of genomic intervals

Other Packages Related to r-bioc-genomicranges:

dep: [r-base-core] (>= 4.2.2.20221110-1)
GNU R core of statistical computation and graphics system
dep: r-api-4.0
Package not available
dep: r-api-bioc-3.16
Package not available
dep: [r-bioc-biocgenerics] (>= 0.37.0)
generic functions for Bioconductor
dep: [r-bioc-s4vectors] (>= 0.27.12)
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges] (>= 2.31.2)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-genomeinfodb] (>= 1.15.2)
BioConductor utilities for manipulating chromosome identifiers
dep: [r-bioc-xvector] (>= 0.29.2)
BioConductor representation and manpulation of external sequences
dep: [libc6] (>= 2.4)
GNU C Library: Shared libraries

sug: [r-cran-matrix]
GNU R package of classes for dense and sparse matrices
sug: [r-bioc-biobase]
base functions for Bioconductor
sug: [r-bioc-annotationdbi]
GNU R Annotation Database Interface for BioConductor
sug: [r-bioc-annotate]
BioConductor annotation for microarrays
sug: [r-bioc-biostrings] (>= 2.25.3)
GNU R string objects representing biological sequences
sug: [r-bioc-summarizedexperiment] (>= 0.1.5)
BioConductor assay container
sug: [r-bioc-rsamtools] (>= 1.13.53)
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
sug: [r-bioc-genomicalignments]
BioConductor representation and manipulation of short genomic alignments
sug: [r-bioc-rtracklayer]
GNU R interface to genome browsers and their annotation tracks
sug: [r-bioc-bsgenome]
BioConductor infrastructure for Biostrings-based genome data packages
sug: [r-bioc-genomicfeatures]
GNU R tools for making and manipulating transcript centric annotations
sug: [r-bioc-gviz]
Plotting data and annotation information along genomic coordinates
sug: [r-bioc-variantannotation]
BioConductor annotation of genetic variants
sug: [r-bioc-annotationhub]
GNU R client to access AnnotationHub resources
sug: [r-bioc-deseq2]
R package for RNA-Seq Differential Expression Analysis
sug: [r-bioc-dexseq]
GNU R inference of differential exon usage in RNA-Seq
sug: [r-bioc-edger]
Empirical analysis of digital gene expression data in R
sug: [r-bioc-keggrest]
GNU R client-side REST access to KEGG
sug: [r-cran-runit]
GNU R package providing unit testing framework
sug: [r-cran-digest]
GNU R package for 'hash digest' of R data structures
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents

Download r-bioc-genomicranges

Architecture	Package Size	Installed Size	Files
amd64	1.7 MiB	2.7 MiB	[list of files]
arm64	1.7 MiB	2.7 MiB	[list of files]

Paketdateipfade (55)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/GenomicRanges/CITATION
/usr/lib/R/site-library/GenomicRanges/DESCRIPTION
/usr/lib/R/site-library/GenomicRanges/doc/ExtendingGenomicRanges.pdf
/usr/lib/R/site-library/GenomicRanges/doc/ExtendingGenomicRanges.R
/usr/lib/R/site-library/GenomicRanges/doc/ExtendingGenomicRanges.Rnw
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesHOWTOs.pdf
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesHOWTOs.R
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesHOWTOs.Rnw
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesIntroduction.R
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesIntroduction.Rmd
/usr/lib/R/site-library/GenomicRanges/doc/GRanges_and_GRangesList_slides.pdf
/usr/lib/R/site-library/GenomicRanges/doc/GRanges_and_GRangesList_slides.R
/usr/lib/R/site-library/GenomicRanges/doc/GRanges_and_GRangesList_slides.Rnw
/usr/lib/R/site-library/GenomicRanges/doc/index.html
/usr/lib/R/site-library/GenomicRanges/doc/Ten_things_slides.pdf
/usr/lib/R/site-library/GenomicRanges/doc/Ten_things_slides.R
/usr/lib/R/site-library/GenomicRanges/doc/Ten_things_slides.Rnw
/usr/lib/R/site-library/GenomicRanges/extdata/feature_frags.txt
/usr/lib/R/site-library/GenomicRanges/help/aliases.rds
/usr/lib/R/site-library/GenomicRanges/help/AnIndex
/usr/lib/R/site-library/GenomicRanges/help/GenomicRanges.rdb
/usr/lib/R/site-library/GenomicRanges/help/GenomicRanges.rdx
/usr/lib/R/site-library/GenomicRanges/help/paths.rds
/usr/lib/R/site-library/GenomicRanges/html/00Index.html
/usr/lib/R/site-library/GenomicRanges/html/R.css
/usr/lib/R/site-library/GenomicRanges/INDEX
/usr/lib/R/site-library/GenomicRanges/libs/GenomicRanges.so
/usr/lib/R/site-library/GenomicRanges/Meta/features.rds
/usr/lib/R/site-library/GenomicRanges/Meta/hsearch.rds
/usr/lib/R/site-library/GenomicRanges/Meta/links.rds
/usr/lib/R/site-library/GenomicRanges/Meta/nsInfo.rds
/usr/lib/R/site-library/GenomicRanges/Meta/package.rds
/usr/lib/R/site-library/GenomicRanges/Meta/Rd.rds
/usr/lib/R/site-library/GenomicRanges/Meta/vignette.rds
/usr/lib/R/site-library/GenomicRanges/NAMESPACE
/usr/lib/R/site-library/GenomicRanges/NEWS
/usr/lib/R/site-library/GenomicRanges/R/GenomicRanges
/usr/lib/R/site-library/GenomicRanges/R/GenomicRanges.rdb
/usr/lib/R/site-library/GenomicRanges/R/GenomicRanges.rdx
/usr/lib/R/site-library/GenomicRanges/scripts/timing_overlaps.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_coverage-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_findOverlaps-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_GenomicRanges-comparison.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_GNCList-class.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_GRanges-class.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_GRangesList-class.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_inter-range-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_intra-range-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_makeGRangesFromDataFrame.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_makeGRangesListFromDataFrame.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_nearest-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_precede_follow.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_setops-methods.R
/usr/share/doc/r-bioc-genomicranges/changelog.Debian.gz
/usr/share/doc/r-bioc-genomicranges/copyright

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 12 (Bookworm) im Browser testen Image mit r-bioc-genomicranges bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.50.2+dfsg-1	bookworm / main	amd64	Debian 12 · main · amd64	1.7 MiB	2.7 MiB	pool/main/r/r-bioc-genomicranges/r-bioc-genomicranges_1.50.2+dfsg-1_amd64.deb
1.50.2+dfsg-1	bookworm / main	arm64	Debian 12 · main · arm64	1.7 MiB	2.7 MiB	pool/main/r/r-bioc-genomicranges/r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.50.2+dfsg-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3f0dfe3fa5ad03f9b9ea4b0bc0b775f853ee242f45813b41d1b317879fc2bea1

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '3f0dfe3fa5ad03f9b9ea4b0bc0b775f853ee242f45813b41d1b317879fc2bea1' 'r-bioc-genomicranges_1.50.2+dfsg-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.50.2+dfsg-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6efb8af806d9c15cec5ba93b798398bede56403f5c21c7e67ad53457c27ca597

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '6efb8af806d9c15cec5ba93b798398bede56403f5c21c7e67ad53457c27ca597' 'r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified