Debian 12 (Bookworm) native package

reapr

universal tool for genome assembly evaluation

Packages / Debian 12 (Bookworm) / science / reapr

[Source: reapr]

Package: reapr (1.0.18+dfsg-5+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.sanger.ac.uk]

universal tool for genome assembly evaluation

Other Packages Related to reapr:

dep: [libbamtools2.5.2] (>= 2.5.2+dfsg)
dynamic library for manipulating BAM (genome alignment) files
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 11)
GNU Standard C++ Library v3
dep: [libtabixpp0] (>= 1.0.0)
C++ wrapper to tabix indexer
dep: [samtools] (>= 1.3)
processing sequence alignments in SAM, BAM and CRAM formats
dep: [bamtools]
toolkit for manipulating BAM (genome alignment) files
dep: [smalt]
Sequence Mapping and Alignment Tool
dep: [r-base]
GNU R statistical computation and graphics system
dep: [snpomatic]
fast, stringent short-read mapping software
dep: [tabix]
generic indexer for TAB-delimited genome position files
dep: [libfile-copy-link-perl]
Perl extension for replacing a link by a copy of the linked file

Download reapr

Architecture	Package Size	Installed Size	Files
amd64	204 KiB	1.0 MiB	[list of files]
arm64	179 KiB	1.3 MiB	[list of files]

Package file paths (44)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/reapr
/usr/lib/reapr/bam2fcdEstimate
/usr/lib/reapr/bam2fragCov
/usr/lib/reapr/bam2insert
/usr/lib/reapr/bam2perfect
/usr/lib/reapr/fa2gaps
/usr/lib/reapr/fa2gc
/usr/lib/reapr/make_plots
/usr/lib/reapr/n50
/usr/lib/reapr/reapr.pl
/usr/lib/reapr/scaff2contig
/usr/lib/reapr/task_break
/usr/lib/reapr/task_facheck.pl
/usr/lib/reapr/task_fcdrate
/usr/lib/reapr/task_gapresize
/usr/lib/reapr/task_perfectfrombam.pl
/usr/lib/reapr/task_perfectmap.pl
/usr/lib/reapr/task_pipeline.pl
/usr/lib/reapr/task_plots.pl
/usr/lib/reapr/task_preprocess.pl
/usr/lib/reapr/task_score
/usr/lib/reapr/task_seqrename.pl
/usr/lib/reapr/task_smaltmap.pl
/usr/lib/reapr/task_stats
/usr/lib/reapr/task_summary.pl
/usr/share/doc/reapr/changelog.Debian.amd64.gz
/usr/share/doc/reapr/changelog.Debian.arm64.gz
/usr/share/doc/reapr/changelog.Debian.gz
/usr/share/doc/reapr/changelog.gz
/usr/share/doc/reapr/copyright
/usr/share/man/man1/reapr.1.gz
/usr/share/man/man1/reapr-break.1.gz
/usr/share/man/man1/reapr-facheck.1.gz
/usr/share/man/man1/reapr-gapresize.1.gz
/usr/share/man/man1/reapr-perfectfrombam.1.gz
/usr/share/man/man1/reapr-perfectmap.1.gz
/usr/share/man/man1/reapr-pipeline.1.gz
/usr/share/man/man1/reapr-plots.1.gz
/usr/share/man/man1/reapr-preprocess.1.gz
/usr/share/man/man1/reapr-score.1.gz
/usr/share/man/man1/reapr-seqrename.1.gz
/usr/share/man/man1/reapr-smaltmap.1.gz
/usr/share/man/man1/reapr-stats.1.gz
/usr/share/man/man1/reapr-summary.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.0.18+dfsg-5+b1	bookworm / main	amd64	Debian 12 · main · amd64	204 KiB	1.0 MiB	pool/main/r/reapr/reapr_1.0.18+dfsg-5+b1_amd64.deb
1.0.18+dfsg-5+b1	bookworm / main	arm64	Debian 12 · main · arm64	179 KiB	1.3 MiB	pool/main/r/reapr/reapr_1.0.18+dfsg-5+b1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.0.18+dfsg-5+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: a1a215406b0e8df21f50bd0a224931c873006f56139aabb8c7ed98579c001f51

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'a1a215406b0e8df21f50bd0a224931c873006f56139aabb8c7ed98579c001f51' 'reapr_1.0.18+dfsg-5+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.0.18+dfsg-5+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: d2e22b9795a297b291ab10fe45fe826d449c3fd7711c18bfb85fa7d7a3a4a2cc

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'd2e22b9795a297b291ab10fe45fe826d449c3fd7711c18bfb85fa7d7a3a4a2cc' 'reapr_1.0.18+dfsg-5+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified