Debian 12 (Bookworm) native package

seqan-apps

C++ library for the analysis of biological sequences

Packages / Debian 12 (Bookworm) / science / seqan-apps

[Source: seqan2]

Package: seqan-apps (2.4.0+dfsg-15)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.seqan.de]

Similar packages:

[libseqan2-dev]
C++ library for the analysis of biological sequences (development)

C++ library for the analysis of biological sequences

Other Packages Related to seqan-apps:

dep: [libbz2-1.0]
high-quality block-sorting file compressor library - runtime
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.4)
GCC support library
dep: [libgomp1] (>= 6)
GCC OpenMP (GOMP) support library
dep: [libstdc++6] (>= 12.2.0-10)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime

sug: [cwltool]
Common Workflow Language reference implementation
sug: cwl-runner
Package not available

Download seqan-apps

Architecture	Package Size	Installed Size	Files
amd64	12 MiB	75 MiB	[list of files]
arm64	11 MiB	70 MiB	[list of files]

Package file paths (180)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/alf
/usr/bin/gustaf
/usr/bin/insegt
/usr/bin/mason_frag_sequencing
/usr/bin/mason_genome
/usr/bin/mason_materializer
/usr/bin/mason_methylation
/usr/bin/micro_razers
/usr/bin/pair_align
/usr/bin/rabema_build_gold_standard
/usr/bin/rabema_evaluate
/usr/bin/rabema_prepare_sam
/usr/bin/razers
/usr/bin/razers3
/usr/bin/sak
/usr/bin/seqan_tcoffee
/usr/bin/snp_store
/usr/bin/splazers
/usr/bin/stellar
/usr/bin/tree_recon
/usr/bin/yara_indexer
/usr/bin/yara_mapper
/usr/lib/seqan/bin/alf
/usr/lib/seqan/bin/bam2roi
/usr/lib/seqan/bin/bed_sort.sh
/usr/lib/seqan/bin/bisar
/usr/lib/seqan/bin/casbar
/usr/lib/seqan/bin/compute_gain
/usr/lib/seqan/bin/dfi
/usr/lib/seqan/bin/fiona
/usr/lib/seqan/bin/fiona_illumina
/usr/lib/seqan/bin/four2three
/usr/lib/seqan/bin/fx_bam_coverage
/usr/lib/seqan/bin/gff_sort.sh
/usr/lib/seqan/bin/gustaf
/usr/lib/seqan/bin/gustaf_mate_joining
/usr/lib/seqan/bin/insegt
/usr/lib/seqan/bin/mason_frag_sequencing
/usr/lib/seqan/bin/mason_genome
/usr/lib/seqan/bin/mason_materializer
/usr/lib/seqan/bin/mason_methylation
/usr/lib/seqan/bin/mason_simulator
/usr/lib/seqan/bin/mason_splicing
/usr/lib/seqan/bin/mason_variator
/usr/lib/seqan/bin/micro_razers
/usr/lib/seqan/bin/pair_align
/usr/lib/seqan/bin/param_chooser
/usr/lib/seqan/bin/plot.awk
/usr/lib/seqan/bin/ps2pswLinks.gawk
/usr/lib/seqan/bin/rabema_build_gold_standard
/usr/lib/seqan/bin/rabema_evaluate
/usr/lib/seqan/bin/rabema_prepare_sam
/usr/lib/seqan/bin/razers
/usr/lib/seqan/bin/razers3
/usr/lib/seqan/bin/rep_sep
/usr/lib/seqan/bin/roi_feature_projection
/usr/lib/seqan/bin/roi_plot_9.sh
/usr/lib/seqan/bin/roi_plot_thumbnails
/usr/lib/seqan/bin/roi_sort.sh
/usr/lib/seqan/bin/s4_join
/usr/lib/seqan/bin/s4_search
/usr/lib/seqan/bin/sak
/usr/lib/seqan/bin/sam2matrix
/usr/lib/seqan/bin/samcat
/usr/lib/seqan/bin/seqan_tcoffee
/usr/lib/seqan/bin/seqcons2
/usr/lib/seqan/bin/sgip
/usr/lib/seqan/bin/snp_store
/usr/lib/seqan/bin/splazers
/usr/lib/seqan/bin/stellar
/usr/lib/seqan/bin/tree_recon
/usr/lib/seqan/bin/yara_indexer
/usr/lib/seqan/bin/yara_mapper
/usr/share/doc/seqan-apps/alf/example/small.fasta
/usr/share/doc/seqan-apps/alf/README.gz
/usr/share/doc/seqan-apps/bs_tools/README
/usr/share/doc/seqan-apps/changelog.Debian.gz
/usr/share/doc/seqan-apps/changelog.gz
/usr/share/doc/seqan-apps/copyright
/usr/share/doc/seqan-apps/dfi/example/fasta1.fa
/usr/share/doc/seqan-apps/dfi/example/fasta2.fa
/usr/share/doc/seqan-apps/dfi/README.gz
/usr/share/doc/seqan-apps/fiona/example/reads.fa.gz
/usr/share/doc/seqan-apps/fiona/README
/usr/share/doc/seqan-apps/fx_tools/README
/usr/share/doc/seqan-apps/gustaf/example/adeno.fa.gz
/usr/share/doc/seqan-apps/gustaf/example/adeno_modified.fa.gz
/usr/share/doc/seqan-apps/gustaf/example/adeno_modified_reads.fa
/usr/share/doc/seqan-apps/gustaf/example/stellar.gff
/usr/share/doc/seqan-apps/gustaf/README.gz
/usr/share/doc/seqan-apps/insegt/example/annoOutput.gff
/usr/share/doc/seqan-apps/insegt/example/annotations.gff
/usr/share/doc/seqan-apps/insegt/example/readOutput.gff
/usr/share/doc/seqan-apps/insegt/example/tupleOutput.gff
/usr/share/doc/seqan-apps/insegt/README.gz
/usr/share/doc/seqan-apps/mason2/example/adeno_virus.fa.gz
/usr/share/doc/seqan-apps/mason2/README
/usr/share/doc/seqan-apps/mason2/README.mason_frag_sequencing
/usr/share/doc/seqan-apps/mason2/README.mason_genome
/usr/share/doc/seqan-apps/mason2/README.mason_materializer
/usr/share/doc/seqan-apps/mason2/README.mason_methylation.gz
/usr/share/doc/seqan-apps/mason2/README.mason_simulator.gz
/usr/share/doc/seqan-apps/mason2/README.mason_splicing
/usr/share/doc/seqan-apps/mason2/README.mason_variator.gz
/usr/share/doc/seqan-apps/micro_razers/example/genome.fa
/usr/share/doc/seqan-apps/micro_razers/example/reads.fa
/usr/share/doc/seqan-apps/micro_razers/example/reads.fa.result
/usr/share/doc/seqan-apps/micro_razers/README.gz
/usr/share/doc/seqan-apps/ngs_roi/example/dmel.bed.gz
/usr/share/doc/seqan-apps/ngs_roi/example/dmel.gtf.gz
/usr/share/doc/seqan-apps/ngs_roi/example/example.bam.gz
/usr/share/doc/seqan-apps/ngs_roi/README.gz
/usr/share/doc/seqan-apps/ngs_roi/R/ngsroi_0.1.tar.gz
/usr/share/doc/seqan-apps/ngs_roi/R/ngsroi_0.1.zip
/usr/share/doc/seqan-apps/pair_align/README
/usr/share/doc/seqan-apps/param_chooser/README
/usr/share/doc/seqan-apps/rabema/README.gz
/usr/share/doc/seqan-apps/razers3/example/genome.fa
/usr/share/doc/seqan-apps/razers3/example/reads2.fa
/usr/share/doc/seqan-apps/razers3/example/reads.fa
/usr/share/doc/seqan-apps/razers3/README.gz
/usr/share/doc/seqan-apps/razers/example/genome.fa
/usr/share/doc/seqan-apps/razers/example/reads2.fa
/usr/share/doc/seqan-apps/razers/example/reads.fa
/usr/share/doc/seqan-apps/razers/README.gz
/usr/share/doc/seqan-apps/README.Debian
/usr/share/doc/seqan-apps/rep_sep/README
/usr/share/doc/seqan-apps/sak/README
/usr/share/doc/seqan-apps/sak/README.sak.txt
/usr/share/doc/seqan-apps/sam2matrix/README
/usr/share/doc/seqan-apps/samcat/README
/usr/share/doc/seqan-apps/searchjoin/README
/usr/share/doc/seqan-apps/seqan_tcoffee/example/seq.fa
/usr/share/doc/seqan-apps/seqan_tcoffee/README
/usr/share/doc/seqan-apps/seqcons2/README
/usr/share/doc/seqan-apps/sgip/example/iso_m2D_m196.A01
/usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A00.gz
/usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A01.gz
/usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B00.gz
/usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B01.gz
/usr/share/doc/seqan-apps/sgip/example/latin-4
/usr/share/doc/seqan-apps/sgip/example/lattice-4
/usr/share/doc/seqan-apps/sgip/example/sts-7
/usr/share/doc/seqan-apps/sgip/README
/usr/share/doc/seqan-apps/snp_store/example/exampleGenome.fa.gz
/usr/share/doc/seqan-apps/snp_store/example/exampleReads.gff
/usr/share/doc/seqan-apps/snp_store/README.gz
/usr/share/doc/seqan-apps/splazers/example/genome.fa
/usr/share/doc/seqan-apps/splazers/example/reads.fa
/usr/share/doc/seqan-apps/splazers/example/reads.fa.result
/usr/share/doc/seqan-apps/splazers/README.gz
/usr/share/doc/seqan-apps/stellar/example/NC_001474.fasta.gz
/usr/share/doc/seqan-apps/stellar/example/NC_001477.fasta.gz
/usr/share/doc/seqan-apps/stellar/example/reads.fasta
/usr/share/doc/seqan-apps/stellar/README.gz
/usr/share/doc/seqan-apps/tree_recon/example/example.dist
/usr/share/doc/seqan-apps/tree_recon/README
/usr/share/doc/seqan-apps/yara/README.rst.gz
/usr/share/man/man1/alf.1.gz
/usr/share/man/man1/gustaf.1.gz
/usr/share/man/man1/insegt.1.gz
/usr/share/man/man1/mason_frag_sequencing.1.gz
/usr/share/man/man1/mason_genome.1.gz
/usr/share/man/man1/mason_materializer.1.gz
/usr/share/man/man1/mason_methylation.1.gz
/usr/share/man/man1/micro_razers.1.gz
/usr/share/man/man1/pair_align.1.gz
/usr/share/man/man1/rabema_build_gold_standard.1.gz
/usr/share/man/man1/rabema_evaluate.1.gz
/usr/share/man/man1/rabema_prepare_sam.1.gz
/usr/share/man/man1/razers.1.gz
/usr/share/man/man1/razers3.1.gz
/usr/share/man/man1/sak.1.gz
/usr/share/man/man1/seqan_tcoffee.1.gz
/usr/share/man/man1/snp_store.1.gz
/usr/share/man/man1/splazers.1.gz
/usr/share/man/man1/stellar.1.gz
/usr/share/man/man1/tree_recon.1.gz
/usr/share/man/man1/yara_indexer.1.gz
/usr/share/man/man1/yara_mapper.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browser Build an image that includes seqan-apps

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.4.0+dfsg-15	bookworm / main	amd64	Debian 12 · main · amd64	12 MiB	75 MiB	pool/main/s/seqan2/seqan-apps_2.4.0+dfsg-15_amd64.deb
2.4.0+dfsg-15	bookworm / main	arm64	Debian 12 · main · arm64	11 MiB	70 MiB	pool/main/s/seqan2/seqan-apps_2.4.0+dfsg-15_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.4.0+dfsg-15 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 0a05ae2a9face41c2f18f476a936c8c8a6d45f9a152f451d2b32d3e811e3d41f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '0a05ae2a9face41c2f18f476a936c8c8a6d45f9a152f451d2b32d3e811e3d41f' 'seqan-apps_2.4.0+dfsg-15_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

2.4.0+dfsg-15 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: de60390050fd70f646e1bb442f8c566165fbd3afa41fe2e264278527f17e9590

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'de60390050fd70f646e1bb442f8c566165fbd3afa41fe2e264278527f17e9590' 'seqan-apps_2.4.0+dfsg-15_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified