Linux workstation

Debian 12 (Bookworm) native package

sift

predicts if a substitution in a protein has a phenotypic effect

Packages / Debian 12 (Bookworm) / non-free/science / sift

[Source: sift]

Package: sift

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [sift.bii.a-star.edu.sg]

predicts if a substitution in a protein has a phenotypic effect

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Paketdateipfade (73)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/info_on_seqs
  • /usr/bin/map_coords_to_bin.pl
  • /usr/bin/SIFT_exome_nssnvs.pl
  • /usr/bin/sift_feed_to_chr_coords_batch.pl
  • /usr/bin/sift_for_submitting_fasta_seq.csh
  • /usr/bin/SIFT_for_submitting_fasta_seq.csh
  • /usr/bin/snv_db_engine.pl
  • /usr/lib/sift/bin/choose_seqs_via_psiblastseedmedian
  • /usr/lib/sift/bin/Classify_SNPs_Indels.pl
  • /usr/lib/sift/bin/clump_output_alignedseq
  • /usr/lib/sift/bin/consensus_to_seq
  • /usr/lib/sift/bin/detect_indel.pl
  • /usr/lib/sift/bin/detect_repeat.pl
  • /usr/lib/sift/bin/DNA_PROT_SUBROUTINES.pl
  • /usr/lib/sift/bin/get_sequences.pl
  • /usr/lib/sift/bin/indelfile_to_gff.pl
  • /usr/lib/sift/bin/info_on_seqs
  • /usr/lib/sift/bin/IntersectLocations.sh
  • /usr/lib/sift/bin/map_coords_to_bin_indels.pl
  • /usr/lib/sift/bin/map_coords_to_bin.pl
  • /usr/lib/sift/bin/model_transcript.pl
  • /usr/lib/sift/bin/perlscripts/get_BLINK_seq.pl
  • /usr/lib/sift/bin/perlscripts/separate_query_from_rest_of_seqs.pl
  • /usr/lib/sift/bin/psiblast_res_to_fasta_dbpairwise
  • /usr/lib/sift/bin/reformat_chrfile.pl
  • /usr/lib/sift/bin/seqs_chosen_via_median_info.csh
  • /usr/lib/sift/bin/seqs_from_psiblast_res
  • /usr/lib/sift/bin/seqs_to_matrixweb
  • /usr/lib/sift/bin/SIFT_exome_indels.pl
  • /usr/lib/sift/bin/SIFT_exome_nssnvs.pl
  • /usr/lib/sift/bin/sift_feed_to_chr_coords_batch.pl
  • /usr/lib/sift/bin/SIFT_for_submitting_fasta_seq.csh
  • /usr/lib/sift/bin/SIFT_for_submitting_NCBI_gi_id.csh
  • /usr/lib/sift/bin/SIFT_intersect_cds.pl
  • /usr/lib/sift/bin/SIFT_subroutines.pm
  • /usr/lib/sift/bin/SNPClassifier/Classify_SNPs.pl
  • /usr/lib/sift/bin/SNPClassifier/Extract_Coding_Info.pl
  • /usr/lib/sift/bin/snv_db_engine.pl
  • /usr/share/doc/sift/changelog.Debian.amd64.gz
  • /usr/share/doc/sift/changelog.Debian.gz
  • /usr/share/doc/sift/copyright
  • /usr/share/doc/sift/examples/lacI.alignedfasta
  • /usr/share/doc/sift/examples/lacI.fasta
  • /usr/share/doc/sift/examples/lacI.fasta.query.out.gz
  • /usr/share/doc/sift/examples/lacI.SIFTprediction
  • /usr/share/doc/sift/examples/lacI.subst
  • /usr/share/doc/sift/README_4.0.3.gz
  • /usr/share/doc/sift/README.Debian
  • /usr/share/doc/sift/README.gz
  • /usr/share/doc/sift/VERSION_UPDATE
  • /usr/share/man/man1/info_on_seqs.1.gz
  • /usr/share/man/man1/sift_for_submitting_fasta_seq.csh.1.gz
  • /usr/share/man/man1/SIFT_for_submitting_fasta_seq.csh.1.gz
  • /usr/share/sift/blimps/docs/blosum62.bla.new
  • /usr/share/sift/blimps/docs/coduse.csh
  • /usr/share/sift/blimps/docs/config.doc
  • /usr/share/sift/blimps/docs/default.amino.frq
  • /usr/share/sift/blimps/docs/default.codon.frq
  • /usr/share/sift/blimps/docs/default.codon.use
  • /usr/share/sift/blimps/docs/default.consensus.iij
  • /usr/share/sift/blimps/docs/default.diri
  • /usr/share/sift/blimps/docs/default.embed.iij
  • /usr/share/sift/blimps/docs/default.embed.mat
  • /usr/share/sift/blimps/docs/default.embed.qij
  • /usr/share/sift/blimps/docs/default.iij
  • /usr/share/sift/blimps/docs/default.mat
  • /usr/share/sift/blimps/docs/default.qij
  • /usr/share/sift/blimps/docs/default.rank
  • /usr/share/sift/blimps/docs/default.sij
  • /usr/share/sift/blimps/docs/identity.frq
  • /usr/share/sift/blimps/docs/skiplist.doc
  • /usr/share/sift/blimps/docs/sl-functions.doc
  • /usr/share/sift/IntersectFeatures.jar

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 12 (Bookworm) im Browser testenImage mit sift bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Keine veröffentlichten Datensätze passen zu diesem Suite- und Architekturfilter.

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) non-free amd64 revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) non-free amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: non-free/binary-amd64/Packages.xz
    Expected SHA-256: 8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d
    Observed SHA-256: 8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d
    Result: match verified

sift Package for Debian 12 (Bookworm) | OpenFactory