Packages / Debian 12 (Bookworm) / science / srst2

Package: srst2 (0.2.0-9)

Short Read Sequence Typing for Bacterial Pathogens

Other Packages Related to srst2:

  • dep: [python3] [any]

    interactive high-level object-oriented language (default python3 version)

  • dep: [bowtie2]

    ultrafast memory-efficient short read aligner

  • dep: [cd-hit]

    suite of programs designed to quickly group sequences

  • dep: [samtools]

    processing sequence alignments in SAM, BAM and CRAM formats

  • dep: [python3-scipy]

    scientific tools for Python 3

  • dep: [python3-biopython]

    Python3 library for bioinformatics

  • rec: [python3-rpy2]

    Python3 interface to the GNU R language and environment (version 2)

Download srst2

ArchitecturePackage sizeInstalled sizeFilesPackage
amd6460 KiB255 KiBlist of filesDownload
arm6460 KiB255 KiBlist of filesDownload

Percorsi file del pacchetto (40)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/csv_to_gene_db
  • /usr/bin/get_all_vfdb
  • /usr/bin/get_genus_vfdb
  • /usr/bin/getmlst
  • /usr/bin/slurm_srst2
  • /usr/bin/srst2
  • /usr/bin/VFDB_cdhit_to_csv
  • /usr/bin/VFDBgenus
  • /usr/share/doc-base/srst2.srst2
  • /usr/share/doc/srst2/changelog.Debian.gz
  • /usr/share/doc/srst2/changelog.gz
  • /usr/share/doc/srst2/copyright
  • /usr/share/doc/srst2/example.txt.gz
  • /usr/share/doc/srst2/README.html
  • /usr/share/doc/srst2/tests/test_slurm_srst2.py.gz
  • /usr/share/doc/srst2/tests/test_srst2.py.gz
  • /usr/share/man/man1/csv_to_gene_db.1.gz
  • /usr/share/man/man1/get_all_vfdb.1.gz
  • /usr/share/man/man1/get_genus_vfdb.1.gz
  • /usr/share/man/man1/getmlst.1.gz
  • /usr/share/man/man1/slurm_srst2.1.gz
  • /usr/share/man/man1/srst2.1.gz
  • /usr/share/man/man1/VFDB_cdhit_to_csv.1.gz
  • /usr/share/man/man1/VFDBgenus.1.gz
  • /usr/share/python3/runtime.d/srst2.rtupdate
  • /usr/share/srst2/analyseSRST2.py
  • /usr/share/srst2/consensus_alignment.py
  • /usr/share/srst2/database_clustering/align_plot_tree_min3.py
  • /usr/share/srst2/database_clustering/cdhit_to_csv.py
  • /usr/share/srst2/database_clustering/csv_to_gene_db.py
  • /usr/share/srst2/database_clustering/get_all_vfdb.sh
  • /usr/share/srst2/database_clustering/get_genus_vfdb.sh
  • /usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py
  • /usr/share/srst2/database_clustering/VFDBgenus.py
  • /usr/share/srst2/getmlst.py
  • /usr/share/srst2/__init__.py
  • /usr/share/srst2/qsub_srst2.py
  • /usr/share/srst2/slurm_srst2.py
  • /usr/share/srst2/srst2.py
  • /usr/share/srst2/version.py

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usa questo pacchetto

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Prova Debian 12 (Bookworm) nel browserCrea un'immagine che include srst2

Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
0.2.0-9bookworm / mainamd64Debian 12 · main · amd6460 KiB255 KiBpool/main/s/srst2/srst2_0.2.0-9_amd64.deb
0.2.0-9bookworm / mainarm64Debian 12 · main · arm6460 KiB255 KiBpool/main/s/srst2/srst2_0.2.0-9_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.2.0-9 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6b7ce4054edc9075738c19a38e70426f9e45d899438b955ce2354ef7625e7570

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '6b7ce4054edc9075738c19a38e70426f9e45d899438b955ce2354ef7625e7570' 'srst2_0.2.0-9_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

0.2.0-9 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: eb4e9391e4aab889773f026e43f61317df5c8f19a026d5d49546e151d65e76c7

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'eb4e9391e4aab889773f026e43f61317df5c8f19a026d5d49546e151d65e76c7' 'srst2_0.2.0-9_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified