Debian 12 (Bookworm) native package

tvc

genetic variant caller for Ion Torrent sequencing platforms

Packages / Debian 12 (Bookworm) / science / tvc

Package: tvc (5.0.3+git20151221.80e144e+dfsg-5)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [ioncommunity.thermofisher.com]

genetic variant caller for Ion Torrent sequencing platforms

Other Packages Related to tvc:

dep: [libarmadillo11] (>= 1:11.2.3+dfsg)
streamlined C++ linear algebra library
dep: [libbamtools2.5.2] (>= 2.5.2+dfsg)
dynamic library for manipulating BAM (genome alignment) files
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libdisorder0] (>= 0.0.2)
library for entropy measurement of byte streams
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libjsoncpp25] (>= 1.9.5)
library for reading and writing JSON for C++
dep: [libsmithwaterman0] (>= 0.0+git20160702.2610e25)
determine similar regions between two strings or genomic sequences (lib)
dep: [libstdc++6] (>= 11)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [python3]
interactive high-level object-oriented language (default python3 version)

Download tvc

Architecture	Package Size	Installed Size	Files
amd64	1.0 MiB	3.3 MiB	[list of files]
arm64	970 KiB	3.1 MiB	[list of files]

Package file paths (28)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/tvc
/usr/bin/tvcassembly
/usr/bin/tvcutils
/usr/bin/variant_caller_pipeline.py
/usr/share/doc/tvc/changelog.Debian.gz
/usr/share/doc/tvc/copyright
/usr/share/doc/tvc/README.Debian
/usr/share/lintian/overrides/tvc
/usr/share/TVC/examples/example1/expected/small_variants.vcf
/usr/share/TVC/examples/example1/expected/TSVC_variants.vcf
/usr/share/TVC/examples/example1/reference.dict
/usr/share/TVC/examples/example1/reference.fasta
/usr/share/TVC/examples/example1/reference.fasta.fai
/usr/share/TVC/examples/example1/test.bam
/usr/share/TVC/examples/example1/test.bam.bai
/usr/share/TVC/examples/example1/test.bed
/usr/share/TVC/examples/example1/test_merged_plain.bed
/usr/share/TVC/examples/example1/test_original.bed
/usr/share/TVC/examples/example1/test_unmerged_detail.bed
/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json
/usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt
/usr/share/TVC/sse/motifset.txt

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
5.0.3+git20151221.80e144e+dfsg-5	bookworm / main	amd64	Debian 12 · main · amd64	1.0 MiB	3.3 MiB	pool/main/t/tvc/tvc_5.0.3+git20151221.80e144e+dfsg-5_amd64.deb
5.0.3+git20151221.80e144e+dfsg-5	bookworm / main	arm64	Debian 12 · main · arm64	970 KiB	3.1 MiB	pool/main/t/tvc/tvc_5.0.3+git20151221.80e144e+dfsg-5_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

5.0.3+git20151221.80e144e+dfsg-5 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 89050111275d48589127b4b5940d1f5c31bb2340b10a58774d91d05ca302cb86

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '89050111275d48589127b4b5940d1f5c31bb2340b10a58774d91d05ca302cb86' 'tvc_5.0.3+git20151221.80e144e+dfsg-5_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

5.0.3+git20151221.80e144e+dfsg-5 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 750fd0ae7268ad4aa10d03748d29a92c1c31f8298992e8568704f20b175a9daf

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '750fd0ae7268ad4aa10d03748d29a92c1c31f8298992e8568704f20b175a9daf' 'tvc_5.0.3+git20151221.80e144e+dfsg-5_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified