Debian 13 (Trixie) native package

biobambam2

tools for early stage alignment file processing

Packages / Debian 13 (Trixie) / science / biobambam2

Package: biobambam2 (2.0.185+ds-2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [gitlab.com]

tools for early stage alignment file processing

Other Packages Related to biobambam2:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.4)
GCC support library
dep: [libgomp1] (>= 6)
GCC OpenMP (GOMP) support library
dep: [libmaus2-2] (>= 2.0.813+ds)
collection of data structures and algorithms for biobambam
dep: [libstdc++6] (>= 13.1)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime

Download biobambam2

Architecture	Package Size	Installed Size	Files
amd64	9.0 MiB	63 MiB	[list of files]

Percorsi file del pacchetto (141)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/bam12auxmerge
/usr/bin/bam12split
/usr/bin/bam12strip
/usr/bin/bamadapterclip
/usr/bin/bamadapterfind
/usr/bin/bamalignfrac
/usr/bin/bamauxmerge
/usr/bin/bamauxmerge2
/usr/bin/bamauxsort
/usr/bin/bamcat
/usr/bin/bamchecksort
/usr/bin/bamclipreinsert
/usr/bin/bamclipXT
/usr/bin/bamcollate2
/usr/bin/bamdepth
/usr/bin/bamdepthintersect
/usr/bin/bamdifference
/usr/bin/bamdownsamplerandom
/usr/bin/bamexplode
/usr/bin/bamexploderef
/usr/bin/bamfastcat
/usr/bin/bamfastexploderef
/usr/bin/bamfastnumextract
/usr/bin/bamfastsplit
/usr/bin/bamfeaturecount
/usr/bin/bamfillquery
/usr/bin/bamfilteraux
/usr/bin/bamfiltereofblocks
/usr/bin/bamfilterflags
/usr/bin/bamfilterheader
/usr/bin/bamfilterheader2
/usr/bin/bamfilterk
/usr/bin/bamfilterlength
/usr/bin/bamfiltermc
/usr/bin/bamfilternames
/usr/bin/bamfilterrefid
/usr/bin/bamfilterrg
/usr/bin/bamfixmateinformation
/usr/bin/bamfixpairinfo
/usr/bin/bamflagsplit
/usr/bin/bamindex
/usr/bin/bamintervalcomment
/usr/bin/bamintervalcommenthist
/usr/bin/bammapdist
/usr/bin/bammarkduplicates
/usr/bin/bammarkduplicates2
/usr/bin/bammarkduplicatesopt
/usr/bin/bammaskflags
/usr/bin/bammdnm
/usr/bin/bammerge
/usr/bin/bamnumericalindex
/usr/bin/bamnumericalindexstats
/usr/bin/bamrank
/usr/bin/bamranksort
/usr/bin/bamrecalculatecigar
/usr/bin/bamrecompress
/usr/bin/bamrefextract
/usr/bin/bamrefinterval
/usr/bin/bamreheader
/usr/bin/bamreplacechecksums
/usr/bin/bamreset
/usr/bin/bamscrapcount
/usr/bin/bamseqchksum
/usr/bin/bamsormadup
/usr/bin/bamsort
/usr/bin/bamsplit
/usr/bin/bamsplitdiv
/usr/bin/bamstreamingmarkduplicates
/usr/bin/bamtofastq
/usr/bin/bamvalidate
/usr/bin/bamzztoname
/usr/bin/fastaexplod
/usr/bin/fastqtobam
/usr/bin/fastqtobam2
/usr/bin/normalisefasta
/usr/bin/populaterefcache
/usr/share/doc/biobambam2/changelog.Debian.gz
/usr/share/doc/biobambam2/changelog.gz
/usr/share/doc/biobambam2/copyright
/usr/share/doc/biobambam2/examples/README.test-data
/usr/share/doc/biobambam2/examples/SRR11728627.bam
/usr/share/doc/biobambam2/examples/SRR11728641.bam
/usr/share/doc/biobambam2/README.gz
/usr/share/doc/biobambam2/README.md.gz
/usr/share/doc/biobambam2/README.test
/usr/share/doc/biobambam2/README.test-data
/usr/share/doc/biobambam2/run-unit-test
/usr/share/man/man1/bam12auxmerge.1.gz
/usr/share/man/man1/bam12split.1.gz
/usr/share/man/man1/bam12strip.1.gz
/usr/share/man/man1/bamadapterclip.1.gz
/usr/share/man/man1/bamadapterfind.1.gz
/usr/share/man/man1/bamalignfrac.1.gz
/usr/share/man/man1/bamauxmerge.1.gz
/usr/share/man/man1/bamauxmerge2.1.gz
/usr/share/man/man1/bamauxsort.1.gz
/usr/share/man/man1/bambisect.1.gz
/usr/share/man/man1/bamcat.1.gz
/usr/share/man/man1/bamchecksort.1.gz
/usr/share/man/man1/bamclipreinsert.1.gz
/usr/share/man/man1/bamclipXT.1.gz
/usr/share/man/man1/bamcollate2.1.gz
/usr/share/man/man1/bamconsensus.1.gz
/usr/share/man/man1/bamdownsamplerandom.1.gz
/usr/share/man/man1/bamfeaturecount.1.gz
/usr/share/man/man1/bamfillquery.1.gz
/usr/share/man/man1/bamfilteraux.1.gz
/usr/share/man/man1/bamfilterflags.1.gz
/usr/share/man/man1/bamfilterheader.1.gz
/usr/share/man/man1/bamfilterheader2.1.gz
/usr/share/man/man1/bamfiltermc.1.gz
/usr/share/man/man1/bamfilterrg.1.gz
/usr/share/man/man1/bamfixmateinformation.1.gz
/usr/share/man/man1/bamflagsplit.1.gz
/usr/share/man/man1/bamindex.1.gz
/usr/share/man/man1/bamintervalcomment.1.gz
/usr/share/man/man1/bammarkduplicates.1.gz
/usr/share/man/man1/bammarkduplicates2.1.gz
/usr/share/man/man1/bammarkduplicatesopt.1.gz
/usr/share/man/man1/bammaskflags.1.gz
/usr/share/man/man1/bammdnm.1.gz
/usr/share/man/man1/bammerge.1.gz
/usr/share/man/man1/bamrank.1.gz
/usr/share/man/man1/bamranksort.1.gz
/usr/share/man/man1/bamrecalculatecigar.1.gz
/usr/share/man/man1/bamrecompress.1.gz
/usr/share/man/man1/bamreset.1.gz
/usr/share/man/man1/bamseqchksum.1.gz
/usr/share/man/man1/bamsormadup.1.gz
/usr/share/man/man1/bamsort.1.gz
/usr/share/man/man1/bamsplit.1.gz
/usr/share/man/man1/bamsplitdiv.1.gz
/usr/share/man/man1/bamstreamingmarkduplicates.1.gz
/usr/share/man/man1/bamtagconversion.1.gz
/usr/share/man/man1/bamtofastq.1.gz
/usr/share/man/man1/bamvalidate.1.gz
/usr/share/man/man1/bamzztoname.1.gz
/usr/share/man/man1/fastaexplod.1.gz
/usr/share/man/man1/fastqtobam.1.gz
/usr/share/man/man1/filtergtf.1.gz
/usr/share/man/man1/normalisefasta.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usa questo pacchetto

OpenFactory può avviare questo sistema operativo in una macchina virtuale del browser, o iniziare una costruzione che include il nome nativo del pacchetto di questo record.

Prova Debian 13 (Trixie) nel browser Crea un'immagine che include biobambam2

Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.0.185+ds-2	trixie / main	amd64	Debian 13 · main · amd64	9.0 MiB	63 MiB	pool/main/b/biobambam2/biobambam2_2.0.185+ds-2_amd64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.0.185+ds-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: b012a01df8a2e3bbfa38a51d0d61314227c5779869e449d543f7b53ac8e143c4

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'b012a01df8a2e3bbfa38a51d0d61314227c5779869e449d543f7b53ac8e143c4' 'biobambam2_2.0.185+ds-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified