Debian 13 (Trixie) native package

cufflinks

Transcript assembly, differential expression and regulation for RNA-Seq

Packages / Debian 13 (Trixie) / non-free/science / cufflinks

Package: cufflinks (2.2.1+dfsg.1-10)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [cufflinks.cbcb.umd.edu]

Transcript assembly, differential expression and regulation for RNA-Seq

Other Packages Related to cufflinks:

dep: [libboost-serialization1.83.0] (>= 1.83.0)
serialization library for C++
dep: [libboost-thread1.83.0] (>= 1.83.0)
portable C++ multi-threading
dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 4.0)
GCC support library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.2.3.3)
compression library - runtime
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)

rec: [gffread]
GFF/GTF format conversions, region filtering, FASTA sequence extraction

enh: tophat
Package not available

Download cufflinks

Architecture	Package Size	Installed Size	Files
amd64	1.5 MiB	11 MiB	[list of files]
arm64	1.4 MiB	10 MiB	[list of files]

Caminhos de arquivo do pacote (21)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/compress_gtf
/usr/bin/cuffcompare
/usr/bin/cuffdiff
/usr/bin/cufflinks
/usr/bin/cuffmerge
/usr/bin/cuffnorm
/usr/bin/cuffquant
/usr/bin/gtf_to_sam
/usr/share/doc/cufflinks/AUTHORS
/usr/share/doc/cufflinks/changelog.Debian.gz
/usr/share/doc/cufflinks/copyright
/usr/share/doc/cufflinks/README
/usr/share/doc/cufflinks/README.Debian
/usr/share/man/man1/compress_gtf.1.gz
/usr/share/man/man1/cuffcompare.1.gz
/usr/share/man/man1/cuffdiff.1.gz
/usr/share/man/man1/cufflinks.1.gz
/usr/share/man/man1/cuffmerge.1.gz
/usr/share/man/man1/cuffnorm.1.gz
/usr/share/man/man1/cuffquant.1.gz
/usr/share/man/man1/gtf_to_sam.1.gz

Field source: Debian 13 (Trixie) non-free amd64 revision trixie-non-free-amd64:873a1152a9641bbbd32ae06d9bea40c0eb9486caeea340a786d4ab84cb6de6c5

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegador Construir uma imagem que inclui cufflinks

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.2.1+dfsg.1-10	trixie / non-free	amd64	Debian 13 · non-free · amd64	1.5 MiB	11 MiB	pool/non-free/c/cufflinks/cufflinks_2.2.1+dfsg.1-10_amd64.deb
2.2.1+dfsg.1-10	trixie / non-free	arm64	Debian 13 · non-free · arm64	1.4 MiB	10 MiB	pool/non-free/c/cufflinks/cufflinks_2.2.1+dfsg.1-10_arm64.deb

Field source: Debian 13 (Trixie) non-free amd64 revision trixie-non-free-amd64:873a1152a9641bbbd32ae06d9bea40c0eb9486caeea340a786d4ab84cb6de6c5

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.2.1+dfsg.1-10 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: cf02dbcd57147a5336025e8b4c83d2990488d76e168e2387cbb632168e83ae40

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'cf02dbcd57147a5336025e8b4c83d2990488d76e168e2387cbb632168e83ae40' 'cufflinks_2.2.1+dfsg.1-10_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) non-free amd64 revision trixie-non-free-amd64:873a1152a9641bbbd32ae06d9bea40c0eb9486caeea340a786d4ab84cb6de6c5

2.2.1+dfsg.1-10 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: a78c6fc4c4abc9f29952b571772d09b97630f09361dbb326b790b1e54b97858c

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'a78c6fc4c4abc9f29952b571772d09b97630f09361dbb326b790b1e54b97858c' 'cufflinks_2.2.1+dfsg.1-10_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) non-free arm64 revision trixie-non-free-arm64:6187284b3ec84e045bc98bc85f551b3235a274dc567fa547a853554d18217905

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) non-free amd64 revision trixie-non-free-amd64:873a1152a9641bbbd32ae06d9bea40c0eb9486caeea340a786d4ab84cb6de6c5, Debian 13 (Trixie) non-free arm64 revision trixie-non-free-arm64:6187284b3ec84e045bc98bc85f551b3235a274dc567fa547a853554d18217905. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) non-free amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-non-free-amd64:873a1152a9641bbbd32ae06d9bea40c0eb9486caeea340a786d4ab84cb6de6c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: non-free/binary-amd64/Packages.xz
Expected SHA-256: 873a1152a9641bbbd32ae06d9bea40c0eb9486caeea340a786d4ab84cb6de6c5
Observed SHA-256: 873a1152a9641bbbd32ae06d9bea40c0eb9486caeea340a786d4ab84cb6de6c5
Result: match verified
Debian 13 (Trixie) non-free arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-non-free-arm64:6187284b3ec84e045bc98bc85f551b3235a274dc567fa547a853554d18217905
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: non-free/binary-arm64/Packages.xz
Expected SHA-256: 6187284b3ec84e045bc98bc85f551b3235a274dc567fa547a853554d18217905
Observed SHA-256: 6187284b3ec84e045bc98bc85f551b3235a274dc567fa547a853554d18217905
Result: match verified