Packages / Debian 13 (Trixie) / science / nanopolish

[Source: nanopolish]

Package: nanopolish (0.14.0-1+b4)

consensus caller for nanopore sequencing data

Other Packages Related to nanopolish:

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.3.1)

    GCC support library

  • dep: [libgomp1] (>= 6)

    GCC OpenMP (GOMP) support library

  • dep: [libhdf5-310] (>= 1.14.3)

    HDF5 C runtime files - serial version

  • dep: [libhts3t64] (>= 1.17)

    C library for high-throughput sequencing data formats

  • dep: [libslow5-0t64] (>= 0.5.1)

    library for reading & writing SLOW5 files

  • dep: [libstdc++6] (>= 14)

    GNU Standard C++ Library v3

  • dep: [libstreamvbyte0] (>= 0.4.1)

    fast integer compression in C using the StreamVByte codec

  • dep: [zlib1g] (>= 1:1.1.4)

    compression library - runtime

  • dep: [python3] [any]

    interactive high-level object-oriented language (default python3 version)

  • dep: [perl] [any]

    Practical Extraction and Report Language di Larry Wall

  • rec: [python3-biopython]

    Python3 library for bioinformatics

  • rec: [python3-pysam]

    interface for the SAM/BAM sequence alignment and mapping format (Python 3)

  • sug: [perl]

    Practical Extraction and Report Language di Larry Wall

  • sug: [make]

    utility for directing compilation

Download nanopolish

ArchitecturePackage sizeInstalled sizeFilesPackage
amd642.1 MiB9.4 MiBlist of filesDownload
arm642.0 MiB9.3 MiBlist of filesDownload

Percorsi file del pacchetto (32)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/nanopolish
  • /usr/bin/nanopolish_makerange
  • /usr/lib/nanopolish/calculate_methylation_frequency.py
  • /usr/lib/nanopolish/consensus.make
  • /usr/lib/nanopolish/consensus-preprocess.pl
  • /usr/lib/nanopolish/convert_all_models.py
  • /usr/lib/nanopolish/convert_model_to_header.py
  • /usr/lib/nanopolish/dropmodel.py
  • /usr/lib/nanopolish/extract_reads_aligned_to_region.py
  • /usr/lib/nanopolish/import_ont_model.py
  • /usr/lib/nanopolish/import_ont_models_from_dir.sh
  • /usr/lib/nanopolish/nanopolish_makerange.py
  • /usr/lib/nanopolish/nanopolish_merge.py
  • /usr/lib/nanopolish/nanopolish_test
  • /usr/lib/nanopolish/polya_training/dump_signal.py
  • /usr/lib/nanopolish/polya_training/environment.yml
  • /usr/lib/nanopolish/polya_training/hmmplot.py
  • /usr/lib/nanopolish/polya_training/retrain_emission.py
  • /usr/lib/nanopolish/polya_training/workflow.md
  • /usr/lib/nanopolish/reestimate_polya_emissions.py
  • /usr/lib/nanopolish/requirements.txt
  • /usr/share/doc/nanopolish/changelog.Debian.amd64.gz
  • /usr/share/doc/nanopolish/changelog.Debian.arm64.gz
  • /usr/share/doc/nanopolish/changelog.Debian.gz
  • /usr/share/doc/nanopolish/copyright
  • /usr/share/doc/nanopolish/examples/data/LomanLabz_PC_Ecoli_K12_R7.3_2549_1_ch8_file30_strand.fast5
  • /usr/share/doc/nanopolish/README.Debian
  • /usr/share/doc/nanopolish/README.md.gz
  • /usr/share/doc/nanopolish/README.test
  • /usr/share/doc/nanopolish/run-unit-test
  • /usr/share/man/man1/nanopolish.1.gz
  • /usr/share/python3/runtime.d/nanopolish.rtupdate

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Usa questo pacchetto

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Prova Debian 13 (Trixie) nel browserCrea un'immagine che include nanopolish

Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
0.14.0-1+b4trixie / mainarm64Debian 13 · main · arm642.0 MiB9.3 MiBpool/main/n/nanopolish/nanopolish_0.14.0-1+b4_arm64.deb
0.14.0-1+b3trixie / mainamd64Debian 13 · main · amd642.1 MiB9.4 MiBpool/main/n/nanopolish/nanopolish_0.14.0-1+b3_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.14.0-1+b4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 00241e868625dd10ad49826158cc52de0299025bec2917230a6d180c36430c79

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '00241e868625dd10ad49826158cc52de0299025bec2917230a6d180c36430c79' 'nanopolish_0.14.0-1+b4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

0.14.0-1+b3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3c3090d2244df36fbb957c88572bb8a8c0a307334e54bf4edc0fafbe31cc5cfb

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '3c3090d2244df36fbb957c88572bb8a8c0a307334e54bf4edc0fafbe31cc5cfb' 'nanopolish_0.14.0-1+b3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified