Debian 13 (Trixie) native package

nanopolish

consensus caller for nanopore sequencing data

Packages / Debian 13 (Trixie) / science / nanopolish

[Source: nanopolish]

Package: nanopolish (0.14.0-1+b4)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

consensus caller for nanopore sequencing data

Other Packages Related to nanopolish:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.3.1)
GCC support library
dep: [libgomp1] (>= 6)
GCC OpenMP (GOMP) support library
dep: [libhdf5-310] (>= 1.14.3)
HDF5 C runtime files - serial version
dep: [libhts3t64] (>= 1.17)
C library for high-throughput sequencing data formats
dep: [libslow5-0t64] (>= 0.5.1)
library for reading & writing SLOW5 files
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [libstreamvbyte0] (>= 0.4.1)
fast integer compression in C using the StreamVByte codec
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language

rec: [python3-biopython]
Python3 library for bioinformatics
rec: [python3-pysam]
interface for the SAM/BAM sequence alignment and mapping format (Python 3)

sug: [perl]
Larry Wall's Practical Extraction and Report Language
sug: [make]
utility for directing compilation

Download nanopolish

Architecture	Package Size	Installed Size	Files
amd64	2.1 MiB	9.4 MiB	[list of files]
arm64	2.0 MiB	9.3 MiB	[list of files]

Percorsi file del pacchetto (32)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/nanopolish
/usr/bin/nanopolish_makerange
/usr/lib/nanopolish/calculate_methylation_frequency.py
/usr/lib/nanopolish/consensus.make
/usr/lib/nanopolish/consensus-preprocess.pl
/usr/lib/nanopolish/convert_all_models.py
/usr/lib/nanopolish/convert_model_to_header.py
/usr/lib/nanopolish/dropmodel.py
/usr/lib/nanopolish/extract_reads_aligned_to_region.py
/usr/lib/nanopolish/import_ont_model.py
/usr/lib/nanopolish/import_ont_models_from_dir.sh
/usr/lib/nanopolish/nanopolish_makerange.py
/usr/lib/nanopolish/nanopolish_merge.py
/usr/lib/nanopolish/nanopolish_test
/usr/lib/nanopolish/polya_training/dump_signal.py
/usr/lib/nanopolish/polya_training/environment.yml
/usr/lib/nanopolish/polya_training/hmmplot.py
/usr/lib/nanopolish/polya_training/retrain_emission.py
/usr/lib/nanopolish/polya_training/workflow.md
/usr/lib/nanopolish/reestimate_polya_emissions.py
/usr/lib/nanopolish/requirements.txt
/usr/share/doc/nanopolish/changelog.Debian.amd64.gz
/usr/share/doc/nanopolish/changelog.Debian.arm64.gz
/usr/share/doc/nanopolish/changelog.Debian.gz
/usr/share/doc/nanopolish/copyright
/usr/share/doc/nanopolish/examples/data/LomanLabz_PC_Ecoli_K12_R7.3_2549_1_ch8_file30_strand.fast5
/usr/share/doc/nanopolish/README.Debian
/usr/share/doc/nanopolish/README.md.gz
/usr/share/doc/nanopolish/README.test
/usr/share/doc/nanopolish/run-unit-test
/usr/share/man/man1/nanopolish.1.gz
/usr/share/python3/runtime.d/nanopolish.rtupdate

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.14.0-1+b4	trixie / main	arm64	Debian 13 · main · arm64	2.0 MiB	9.3 MiB	pool/main/n/nanopolish/nanopolish_0.14.0-1+b4_arm64.deb
0.14.0-1+b3	trixie / main	amd64	Debian 13 · main · amd64	2.1 MiB	9.4 MiB	pool/main/n/nanopolish/nanopolish_0.14.0-1+b3_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.14.0-1+b4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 00241e868625dd10ad49826158cc52de0299025bec2917230a6d180c36430c79

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '00241e868625dd10ad49826158cc52de0299025bec2917230a6d180c36430c79' 'nanopolish_0.14.0-1+b4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

0.14.0-1+b3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3c3090d2244df36fbb957c88572bb8a8c0a307334e54bf4edc0fafbe31cc5cfb

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '3c3090d2244df36fbb957c88572bb8a8c0a307334e54bf4edc0fafbe31cc5cfb' 'nanopolish_0.14.0-1+b3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified