Debian 13 (Trixie) native package

paml

Phylogenetic Analysis by Maximum Likelihood (PAML)

Packages / Debian 13 (Trixie) / science / paml

Package: paml (4.9j+dfsg-6)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [abacus.gene.ucl.ac.uk]

Phylogenetic Analysis by Maximum Likelihood (PAML)

Other Packages Related to paml:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries

Download paml

Architecture	Package Size	Installed Size	Files
amd64	706 KiB	3.0 MiB	[list of files]
arm64	648 KiB	2.9 MiB	[list of files]

Шляхи файлів пакета (84)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/etc/paml/aaml.ctl
/etc/paml/baseml.ctl
/etc/paml/codeml.ctl
/etc/paml/codonml.ctl
/etc/paml/mcmctree.ctl
/etc/paml/pamp.ctl
/etc/paml/yn00.ctl
/usr/bin/baseml
/usr/bin/basemlg
/usr/bin/chi2
/usr/bin/codeml
/usr/bin/mcmctree
/usr/bin/paml-evolver
/usr/bin/pamp
/usr/bin/yn00
/usr/lib/debian-med/bin/baseml
/usr/lib/debian-med/bin/basemlg
/usr/lib/debian-med/bin/chi2
/usr/lib/debian-med/bin/codeml
/usr/lib/debian-med/bin/evolver
/usr/lib/debian-med/bin/mcmctree
/usr/lib/debian-med/bin/pamp
/usr/lib/debian-med/bin/yn00
/usr/lib/paml/bin/baseml
/usr/lib/paml/bin/basemlg
/usr/lib/paml/bin/chi2
/usr/lib/paml/bin/codeml
/usr/lib/paml/bin/evolver
/usr/lib/paml/bin/mcmctree
/usr/lib/paml/bin/pamp
/usr/lib/paml/bin/yn00
/usr/lib/paml/data/3s.trees
/usr/lib/paml/data/4s.trees
/usr/lib/paml/data/5s.trees
/usr/lib/paml/data/6s.trees
/usr/lib/paml/data/9s.trees
/usr/lib/paml/data/aaml.ctl
/usr/lib/paml/data/abglobin.nuc
/usr/lib/paml/data/baseml.ctl
/usr/lib/paml/data/brown.nuc
/usr/lib/paml/data/brown.rooted.trees
/usr/lib/paml/data/brown.trees
/usr/lib/paml/data/codeml.ctl
/usr/lib/paml/data/codonml.ctl
/usr/lib/paml/data/dat/cpREV10.dat
/usr/lib/paml/data/dat/cpREV64.dat
/usr/lib/paml/data/dat/dayhoff.dat
/usr/lib/paml/data/dat/dayhoff-dcmut.dat
/usr/lib/paml/data/dat/g1974a.dat
/usr/lib/paml/data/dat/g1974c.dat
/usr/lib/paml/data/dat/g1974p.dat
/usr/lib/paml/data/dat/g1974v.dat
/usr/lib/paml/data/dat/grantham.dat
/usr/lib/paml/data/dat/jones.dat
/usr/lib/paml/data/dat/jones-dcmut.dat
/usr/lib/paml/data/dat/lg.dat
/usr/lib/paml/data/dat/miyata.dat
/usr/lib/paml/data/dat/mtArt.dat
/usr/lib/paml/data/dat/mtmam.dat
/usr/lib/paml/data/dat/mtREV24.dat
/usr/lib/paml/data/dat/MtZoa.dat
/usr/lib/paml/data/dat/wag.dat
/usr/lib/paml/data/lysozymeSmall.nuc
/usr/lib/paml/data/lysozymeSmall.trees
/usr/lib/paml/data/MCaa.dat
/usr/lib/paml/data/MCbase.dat
/usr/lib/paml/data/MCbaseRandomTree.dat
/usr/lib/paml/data/MCcodon.dat
/usr/lib/paml/data/mcmctree.ctl
/usr/lib/paml/data/mtCDNApri123.txt
/usr/lib/paml/data/mtCDNApri.trees
/usr/lib/paml/data/mtprim9.nuc
/usr/lib/paml/data/pamp.ctl
/usr/lib/paml/data/stewart.aa
/usr/lib/paml/data/stewart.trees
/usr/lib/paml/data/yn00.ctl
/usr/share/doc/paml/changelog.Debian.gz
/usr/share/doc/paml/copyright
/usr/share/doc/paml/GeneticCode.txt.gz
/usr/share/doc/paml/profile.d/paml
/usr/share/doc/paml/README.Debian
/usr/share/doc/paml/README.test
/usr/share/doc/paml/README.txt
/usr/share/doc/paml/run-unit-test

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузері Зібрати образ, що містить paml

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
4.9j+dfsg-6	trixie / main	amd64	Debian 13 · main · amd64	706 KiB	3.0 MiB	pool/main/p/paml/paml_4.9j+dfsg-6_amd64.deb
4.9j+dfsg-6	trixie / main	arm64	Debian 13 · main · arm64	648 KiB	2.9 MiB	pool/main/p/paml/paml_4.9j+dfsg-6_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

4.9j+dfsg-6 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 08e6da18ecbe0d085f2d9a0577029b8bc617fbb3ea34280a5b8d171c0b0d1d91

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '08e6da18ecbe0d085f2d9a0577029b8bc617fbb3ea34280a5b8d171c0b0d1d91' 'paml_4.9j+dfsg-6_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

4.9j+dfsg-6 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 620106c45e89dddc6c3e4c0cff1277ae1747eab5abc1d32073a2c1c5b479c4df

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '620106c45e89dddc6c3e4c0cff1277ae1747eab5abc1d32073a2c1c5b479c4df' 'paml_4.9j+dfsg-6_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified